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Nickel in PDB 3rqt: 1.5 Angstrom Crystal Structure of the Complex of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Nickel and Two Histidines

Protein crystallography data

The structure of 1.5 Angstrom Crystal Structure of the Complex of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Nickel and Two Histidines, PDB code: 3rqt was solved by G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, O.Kiryukhina, F.Falugi, M.Bottomley, F.Bagnoli, G.Grandi, W.F.Anderson, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.91 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.941, 66.759, 115.492, 90.00, 90.00, 90.00
R / Rfree (%) 14.1 / 17

Nickel Binding Sites:

The binding sites of Nickel atom in the 1.5 Angstrom Crystal Structure of the Complex of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Nickel and Two Histidines (pdb code 3rqt). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the 1.5 Angstrom Crystal Structure of the Complex of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Nickel and Two Histidines, PDB code: 3rqt:

Nickel binding site 1 out of 1 in 3rqt

Go back to Nickel Binding Sites List in 3rqt
Nickel binding site 1 out of 1 in the 1.5 Angstrom Crystal Structure of the Complex of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Nickel and Two Histidines


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of 1.5 Angstrom Crystal Structure of the Complex of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Nickel and Two Histidines within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni473

b:7.3
occ:1.00
ND1 A:HIS471 2.1 6.3 1.0
N A:HIS472 2.1 5.8 1.0
ND1 A:HIS472 2.1 6.1 1.0
O A:HIS471 2.1 8.5 1.0
N A:HIS471 2.1 7.7 1.0
OXT A:HIS472 2.1 6.9 1.0
C A:HIS471 2.8 9.7 1.0
C A:HIS472 2.8 7.5 1.0
CA A:HIS472 2.9 6.4 1.0
CA A:HIS471 2.9 8.3 1.0
CE1 A:HIS471 3.0 10.0 1.0
CE1 A:HIS472 3.1 7.4 1.0
CG A:HIS472 3.1 8.0 1.0
CG A:HIS471 3.1 8.5 1.0
CB A:HIS472 3.5 6.4 1.0
CB A:HIS471 3.5 8.9 1.0
OXT A:HIS471 4.0 10.3 1.0
O A:HIS472 4.0 7.3 1.0
NE2 A:HIS471 4.1 9.8 1.0
NE2 A:HIS472 4.2 8.2 1.0
CD2 A:HIS471 4.2 10.0 1.0
CD2 A:HIS472 4.2 7.1 1.0
O A:SER367 4.2 7.2 1.0
NH2 A:ARG231 4.3 11.4 0.5
NH2 A:ARG322 4.4 9.2 1.0
CD1 A:PHE368 4.7 8.6 1.0
OH A:TYR366 4.7 8.1 1.0
NH1 A:ARG231 4.7 4.8 0.5
CD1 A:LEU14 4.8 12.3 1.0
O A:HOH781 4.9 9.4 1.0

Reference:

G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, O.Kiryukhina, F.Falugi, M.Bottomley, F.Bagnoli, G.Grandi, W.F.Anderson. 1.5 Angstrom Crystal Structure of the Complex of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Nickel and Two Histidines. To Be Published.
Page generated: Wed Oct 9 17:46:13 2024

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