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Nickel in PDB 3zf0: Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A Mutant with Dupnhpp).

Enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A Mutant with Dupnhpp).

All present enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A Mutant with Dupnhpp).:
3.6.1.23;

Protein crystallography data

The structure of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A Mutant with Dupnhpp)., PDB code: 3zf0 was solved by M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.30 / 2.90
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 87.120, 87.120, 87.120, 90.00, 90.00, 90.00
R / Rfree (%) 24.218 / 27.463

Nickel Binding Sites:

The binding sites of Nickel atom in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A Mutant with Dupnhpp). (pdb code 3zf0). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A Mutant with Dupnhpp)., PDB code: 3zf0:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3zf0

Go back to Nickel Binding Sites List in 3zf0
Nickel binding site 1 out of 2 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A Mutant with Dupnhpp).


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A Mutant with Dupnhpp). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1156

b:0.3
occ:0.33
OG1 A:THR77 4.2 68.7 1.0
CB A:THR77 4.5 65.8 1.0
CG2 A:THR77 4.7 64.5 1.0

Nickel binding site 2 out of 2 in 3zf0

Go back to Nickel Binding Sites List in 3zf0
Nickel binding site 2 out of 2 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A Mutant with Dupnhpp).


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A Mutant with Dupnhpp). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1157

b:87.2
occ:0.33
OD1 A:ASP95 2.5 64.0 1.0
OD2 A:ASP95 3.2 69.3 1.0
CG A:ASP95 3.2 65.9 1.0
NE2 A:GLN40 3.6 68.0 1.0
O A:ASP95 4.2 68.5 1.0
NZ A:LYS93 4.7 55.9 1.0
CB A:ASP95 4.7 64.3 1.0
CD A:GLN40 4.7 66.8 1.0

Reference:

M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades. Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. Mol.Cell V. 49 947 2013.
ISSN: ISSN 1097-2765
PubMed: 23333307
DOI: 10.1016/J.MOLCEL.2012.12.013
Page generated: Wed Oct 9 17:56:11 2024

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