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Nickel in PDB 3zfs: Cryo-Em Structure of the F420-Reducing Nife-Hydrogenase From A Methanogenic Archaeon with Bound Substrate

Enzymatic activity of Cryo-Em Structure of the F420-Reducing Nife-Hydrogenase From A Methanogenic Archaeon with Bound Substrate

All present enzymatic activity of Cryo-Em Structure of the F420-Reducing Nife-Hydrogenase From A Methanogenic Archaeon with Bound Substrate:
1.12.98.1;

Other elements in 3zfs:

The structure of Cryo-Em Structure of the F420-Reducing Nife-Hydrogenase From A Methanogenic Archaeon with Bound Substrate also contains other interesting chemical elements:

Iron (Fe) 18 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Cryo-Em Structure of the F420-Reducing Nife-Hydrogenase From A Methanogenic Archaeon with Bound Substrate (pdb code 3zfs). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Cryo-Em Structure of the F420-Reducing Nife-Hydrogenase From A Methanogenic Archaeon with Bound Substrate, PDB code: 3zfs:

Nickel binding site 1 out of 1 in 3zfs

Go back to Nickel Binding Sites List in 3zfs
Nickel binding site 1 out of 1 in the Cryo-Em Structure of the F420-Reducing Nife-Hydrogenase From A Methanogenic Archaeon with Bound Substrate


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Cryo-Em Structure of the F420-Reducing Nife-Hydrogenase From A Methanogenic Archaeon with Bound Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni2990

b:24.9
occ:1.00
FE A:FCO2989 2.5 23.8 1.0
CA A:CYS383 4.4 19.1 1.0
CA A:CYS66 4.5 14.8 1.0
CA A:CYS63 4.5 16.7 1.0
CA A:CYS380 4.8 18.9 1.0

Reference:

D.J.Mills, S.Vitt, M.Strauss, S.Shima, J.Vonck. De Novo Modeling of the F420-Reducing [Nife]-Hydrogenase From A Methanogenic Archaeon By Cryo-Electron Microscopy Elife V. 2 218 2013.
ISSN: ESSN 2050-084X
PubMed: 23483797
DOI: 10.7554/ELIFE.00218
Page generated: Wed Oct 9 17:56:57 2024

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