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Nickel in PDB 4gd3: Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B
Enzymatic activity of Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B
All present enzymatic activity of Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B:
1.12.99.6;
1.12.99.6;
Protein crystallography data
The structure of Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B, PDB code: 4gd3
was solved by
A.Volbeda,
J.C.Fontecilla-Camps,
C.Darnault,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 25.00 / 3.30 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 126.000, 165.300, 212.800, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 20 / 23.6 |
Other elements in 4gd3:
The structure of Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B also contains other interesting chemical elements:
| Magnesium | (Mg) | 4 atoms |
| Iron | (Fe) | 54 atoms |
| Chlorine | (Cl) | 10 atoms |
Nickel Binding Sites:
The binding sites of Nickel atom in the Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B
(pdb code 4gd3). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 4 binding sites of Nickel where determined in the Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B, PDB code: 4gd3:
Jump to Nickel binding site number: 1; 2; 3; 4;
In total 4 binding sites of Nickel where determined in the Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B, PDB code: 4gd3:
Jump to Nickel binding site number: 1; 2; 3; 4;
Nickel binding site 1 out of 4 in 4gd3
Go back to
Nickel Binding Sites List in 4gd3
Nickel binding site 1 out
of 4 in the Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B within 5.0Å range:
|
Nickel binding site 2 out of 4 in 4gd3
Go back to
Nickel Binding Sites List in 4gd3
Nickel binding site 2 out
of 4 in the Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B within 5.0Å range:
|
Nickel binding site 3 out of 4 in 4gd3
Go back to
Nickel Binding Sites List in 4gd3
Nickel binding site 3 out
of 4 in the Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 3 of Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B within 5.0Å range:
|
Nickel binding site 4 out of 4 in 4gd3
Go back to
Nickel Binding Sites List in 4gd3
Nickel binding site 4 out
of 4 in the Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 4 of Structure of E. Coli Hydrogenase-1 in Complex with Cytochrome B within 5.0Å range:
|
Reference:
A.Volbeda,
C.Darnault,
A.Parkin,
F.Sargent,
F.A.Armstrong,
J.C.Fontecilla-Camps.
Crystal Structure of the O(2)-Tolerant Membrane-Bound Hydrogenase 1 From Escherichia Coli in Complex with Its Cognate Cytochrome B. Structure V. 21 184 2013.
ISSN: ISSN 0969-2126
PubMed: 23260654
DOI: 10.1016/J.STR.2012.11.010
Page generated: Wed Oct 9 18:08:40 2024
ISSN: ISSN 0969-2126
PubMed: 23260654
DOI: 10.1016/J.STR.2012.11.010
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