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Nickel in PDB 4gu7: Crystal Structure of Dyp-Type Peroxidase (SCO7193) From Streptomyces Coelicolor

Enzymatic activity of Crystal Structure of Dyp-Type Peroxidase (SCO7193) From Streptomyces Coelicolor

All present enzymatic activity of Crystal Structure of Dyp-Type Peroxidase (SCO7193) From Streptomyces Coelicolor:
1.11.1.19;

Protein crystallography data

The structure of Crystal Structure of Dyp-Type Peroxidase (SCO7193) From Streptomyces Coelicolor, PDB code: 4gu7 was solved by T.Lukk, A.M.A.Hetta, A.Jones, J.Solbiati, S.Majumdar, J.E.Cronan, J.A.Gerlt, S.K.Nair, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.49 / 3.10
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 188.950, 188.950, 188.950, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 20.3

Other elements in 4gu7:

The structure of Crystal Structure of Dyp-Type Peroxidase (SCO7193) From Streptomyces Coelicolor also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Dyp-Type Peroxidase (SCO7193) From Streptomyces Coelicolor (pdb code 4gu7). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Dyp-Type Peroxidase (SCO7193) From Streptomyces Coelicolor, PDB code: 4gu7:

Nickel binding site 1 out of 1 in 4gu7

Go back to Nickel Binding Sites List in 4gu7
Nickel binding site 1 out of 1 in the Crystal Structure of Dyp-Type Peroxidase (SCO7193) From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Dyp-Type Peroxidase (SCO7193) From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ni402

b:66.8
occ:0.59
 NE2 D:HIS286 2.4 55.2 1.0
OD1 D:ASP291 2.6 42.1 1.0
OD2 D:ASP291 2.6 60.8 1.0
OE1 B:GLU268 2.6 88.6 1.0
CE1 D:HIS286 2.7 53.5 1.0
CD B:GLU268 2.8 89.3 1.0
OE2 B:GLU268 2.9 86.1 1.0
CG D:ASP291 2.9 52.1 1.0
CD2 D:HIS286 3.5 48.5 1.0
ND1 D:HIS286 3.8 51.4 1.0
CG B:GLU268 3.9 70.9 1.0
CG D:HIS286 4.2 45.9 1.0
CB D:ASP291 4.5 38.9 1.0
CE1 D:HIS94 4.8 43.9 1.0
CD D:ARG288 4.9 61.1 1.0

Reference:

T.Lukk, A.M.A.Hetta, A.Jones, J.Solbiati, S.Majumdar, J.E.Cronan, J.A.Gerlt, S.K.Nair. Dyp-Type Peroxidases From Stretptomyces and Thermobifida Can Modify Organosolv Lignin. To Be Published.
Page generated: Wed Oct 9 18:10:08 2024

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