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Nickel in PDB 4jz4: Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form

Enzymatic activity of Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form

All present enzymatic activity of Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form, PDB code: 4jz4 was solved by A.Camara-Artigas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.73 / 1.56
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.670, 45.358, 58.022, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 17.6

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form (pdb code 4jz4). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form, PDB code: 4jz4:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 4jz4

Go back to Nickel Binding Sites List in 4jz4
Nickel binding site 1 out of 2 in the Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:16.9
occ:1.00
N A:SER82 1.8 20.2 1.0
ND1 A:HIS83 1.9 13.7 1.0
N A:HIS83 1.9 17.3 1.0
N A:GLY81 2.0 20.7 1.0
C A:GLY81 2.7 23.0 1.0
C A:SER82 2.7 18.8 1.0
CA A:SER82 2.8 20.1 1.0
CA A:GLY81 2.8 22.5 1.0
CG A:HIS83 2.9 15.2 1.0
CE1 A:HIS83 3.0 14.7 1.0
H A:MET84 3.0 16.2 1.0
CA A:HIS83 3.0 16.4 1.0
HE1 A:HIS83 3.2 17.7 1.0
HB3 A:HIS83 3.2 18.8 1.0
CB A:HIS83 3.2 15.7 1.0
HA3 A:GLY81 3.4 27.0 1.0
HG A:SER82 3.4 28.6 1.0
HA A:SER82 3.4 24.1 1.0
N A:MET84 3.6 13.5 1.0
HA2 A:GLY81 3.6 27.0 1.0
C A:HIS83 3.8 16.4 1.0
HA A:HIS83 3.8 19.7 1.0
OG A:SER82 3.9 23.8 1.0
CB A:SER82 3.9 24.0 1.0
O A:GLY81 3.9 25.5 1.0
O A:SER82 3.9 20.4 1.0
CD2 A:HIS83 4.0 15.9 1.0
NE2 A:HIS83 4.0 14.7 1.0
HB2 A:HIS83 4.2 18.8 1.0
HB3 A:SER82 4.3 28.8 1.0
O A:HOH372 4.4 23.9 1.0
HB3 A:MET84 4.5 18.9 1.0
HB2 A:SER82 4.6 28.8 1.0
HB2 A:MET84 4.7 18.9 1.0
CA A:MET84 4.8 14.4 1.0
HE2 A:HIS83 4.8 17.6 1.0
CB A:MET84 4.9 15.7 1.0
HD2 A:HIS83 4.9 19.1 1.0
O A:HIS83 5.0 19.6 1.0

Nickel binding site 2 out of 2 in 4jz4

Go back to Nickel Binding Sites List in 4jz4
Nickel binding site 2 out of 2 in the Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni201

b:16.6
occ:1.00
N B:SER82 1.9 21.0 1.0
ND1 B:HIS83 1.9 17.4 1.0
N B:GLY81 1.9 19.8 1.0
N B:HIS83 1.9 17.9 1.0
C B:SER82 2.8 21.2 1.0
C B:GLY81 2.8 23.8 1.0
CA B:GLY81 2.9 22.5 1.0
CA B:SER82 2.9 22.1 1.0
CG B:HIS83 2.9 17.5 1.0
CE1 B:HIS83 2.9 20.2 1.0
CA B:HIS83 3.0 16.4 1.0
HB3 B:HIS83 3.2 20.5 1.0
HE1 B:HIS83 3.2 24.3 1.0
CB B:HIS83 3.2 17.1 1.0
H B:MET84 3.2 14.5 1.0
HA3 B:GLY81 3.4 27.0 1.0
HA B:SER82 3.5 26.5 1.0
HA2 B:GLY81 3.5 27.0 1.0
HB2 B:SER82 3.7 30.4 1.0
N B:MET84 3.8 12.1 1.0
HA B:HIS83 3.8 19.7 1.0
O B:HOH307 3.8 17.7 1.0
C B:HIS83 3.9 14.9 1.0
CB B:SER82 3.9 25.4 1.0
O B:SER82 4.0 22.5 1.0
O B:GLY81 4.0 26.1 1.0
CD2 B:HIS83 4.0 19.8 1.0
NE2 B:HIS83 4.0 19.9 1.0
HB2 B:HIS83 4.1 20.5 1.0
O B:HOH368 4.2 27.7 1.0
HG2 B:MET84 4.2 22.8 1.0
O B:HOH358 4.3 44.0 1.0
HB3 B:SER82 4.6 30.4 1.0
OG B:SER82 4.7 29.9 1.0
HE2 B:HIS83 4.8 23.9 1.0
HB2 B:MET84 4.8 14.9 1.0
HD2 B:HIS83 4.9 23.7 1.0
O B:HIS83 5.0 14.7 1.0

Reference:

A.Camara-Artigas, A.Camara-Artigas. N/A N/A.
Page generated: Wed Oct 9 18:17:29 2024

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