Nickel in PDB 4u4v: Structure of A Nitrate/Nitrite Antiporter Nark in Apo Inward-Open State

The structure of Structure of A Nitrate/Nitrite Antiporter Nark in Apo Inward-Open State, PDB code: 4u4v was solved by M.Fukuda, H.Takeda, H.E.Kato, S.Doki, K.Ito, A.D.Maturana, R.Ishitani, O.Nureki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.15 / 2.35
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	35.504, 106.532, 124.609, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 23.2

The binding sites of Nickel atom in the Structure of A Nitrate/Nitrite Antiporter Nark in Apo Inward-Open State (pdb code 4u4v). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of A Nitrate/Nitrite Antiporter Nark in Apo Inward-Open State, PDB code: 4u4v:

Nickel binding site 1 out of 1 in the Structure of A Nitrate/Nitrite Antiporter Nark in Apo Inward-Open State


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of A Nitrate/Nitrite Antiporter Nark in Apo Inward-Open State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni507 b:0.2 occ:1.00 NE2 A:HIS460 1.8 83.1 1.0 NE2 A:HIS255 2.0 90.1 1.0 CE1 A:HIS460 2.1 97.2 1.0 CE1 A:HIS255 2.9 88.0 1.0 CD2 A:HIS255 3.0 86.0 1.0 O A:HOH621 3.0 71.2 1.0 CD2 A:HIS460 3.1 86.9 1.0 ND1 A:HIS460 3.3 96.6 1.0 CG A:HIS460 3.8 94.3 1.0 ND1 A:HIS255 4.0 85.9 1.0 CG A:HIS255 4.1 79.3 1.0 NH1 A:ARG459 4.1 0.3 1.0 CZ A:ARG459 4.2 0.4 1.0 NE A:ARG459 4.2 0.8 1.0 NH2 A:ARG459 4.9 0.7 1.0 CD A:ARG459 5.0 91.7 1.0

M.Fukuda, H.Takeda, H.E.Kato, S.Doki, K.Ito, A.D.Maturana, R.Ishitani, O.Nureki. Structural Basis For Dynamic Mechanism of Nitrate/Nitrite Antiport By Nark Nat Commun V. 6 7097 2015.
ISSN: ESSN 2041-1723
PubMed: 25959928
DOI: 10.1038/NCOMMS8097