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Nickel in PDB 4ud6: Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase
Enzymatic activity of Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase
All present enzymatic activity of Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase:
1.12.2.1;
1.12.2.1;
Protein crystallography data
The structure of Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase, PDB code: 4ud6
was solved by
A.Volbeda,
L.Martin,
P.-P.Liebgott,
J.C.Fontecilla-Camps,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 19.99 / 2.12 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 64.940, 99.560, 183.940, 90.00, 91.31, 90.00 |
| R / Rfree (%) | 15.223 / 19.594 |
Other elements in 4ud6:
The structure of Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase also contains other interesting chemical elements:
| Magnesium | (Mg) | 3 atoms |
| Iron | (Fe) | 36 atoms |
Nickel Binding Sites:
The binding sites of Nickel atom in the Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase
(pdb code 4ud6). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 3 binding sites of Nickel where determined in the Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase, PDB code: 4ud6:
Jump to Nickel binding site number: 1; 2; 3;
In total 3 binding sites of Nickel where determined in the Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase, PDB code: 4ud6:
Jump to Nickel binding site number: 1; 2; 3;
Nickel binding site 1 out of 3 in 4ud6
Go back to
Nickel Binding Sites List in 4ud6
Nickel binding site 1 out
of 3 in the Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase within 5.0Å range:
|
Nickel binding site 2 out of 3 in 4ud6
Go back to
Nickel Binding Sites List in 4ud6
Nickel binding site 2 out
of 3 in the Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase within 5.0Å range:
|
Nickel binding site 3 out of 3 in 4ud6
Go back to
Nickel Binding Sites List in 4ud6
Nickel binding site 3 out
of 3 in the Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 3 of Structure of Methylviologen-Treated Anaerobically Purified D. Fructosovorans Nife-Hydrogenase within 5.0Å range:
|
Reference:
A.Volbeda,
L.Martin,
P.-P.Liebgott,
A.L.De Lacey,
J.C.Fontecilla-Camps.
[Nife]-Hydrogenases Revisited: Nickel-Carboxamido Bond Formation in A Variant with Accrued O2-Tolerance and A Tentative Re-Interpretation of Ni-Si States. Metallomics 2015.
ISSN: ESSN 1756-591X
PubMed: 25780984
DOI: 10.1039/C4MT00309H
Page generated: Wed Oct 9 19:12:12 2024
ISSN: ESSN 1756-591X
PubMed: 25780984
DOI: 10.1039/C4MT00309H
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