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Nickel in PDB 4w6f: Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2

Protein crystallography data

The structure of Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2, PDB code: 4w6f was solved by D.J.Leibly, G.S.Waldo, T.O.Yeates, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 84.34 / 2.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.980, 121.980, 140.090, 90.00, 90.00, 120.00
R / Rfree (%) 20.4 / 23.8

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2 (pdb code 4w6f). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2, PDB code: 4w6f:

Nickel binding site 1 out of 1 in 4w6f

Go back to Nickel Binding Sites List in 4w6f
Nickel binding site 1 out of 1 in the Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni302

b:0.1
occ:1.00
N1 B:IMD305 2.1 0.5 0.9
N1 B:IMD303 2.5 0.3 1.0
NE2 B:HIS21 2.5 92.3 1.0
N1 B:IMD301 2.6 0.9 0.9
C5 B:IMD301 2.8 0.4 0.9
N1 B:IMD304 2.8 0.4 1.0
C2 B:IMD305 2.9 0.0 0.9
C5 B:IMD303 2.9 0.4 1.0
CD2 B:HIS21 3.1 92.2 1.0
C5 B:IMD305 3.1 0.8 0.9
C5 B:IMD304 3.5 0.4 1.0
CE1 B:HIS21 3.5 90.5 1.0
C2 B:IMD304 3.6 0.6 1.0
C2 B:IMD303 3.6 0.5 1.0
C2 B:IMD301 3.7 0.8 0.9
C4 B:IMD301 4.0 0.4 0.9
N3 B:IMD305 4.0 0.3 0.9
C4 B:IMD305 4.1 0.1 0.9
C4 B:IMD303 4.1 0.2 1.0
CG B:HIS21 4.2 85.6 1.0
N3 B:IMD301 4.4 0.1 0.9
ND1 B:HIS21 4.4 86.8 1.0
N3 B:IMD303 4.5 0.1 1.0
C4 B:IMD304 4.5 0.1 1.0
N3 B:IMD304 4.6 0.8 1.0

Reference:

D.J.Leibly, M.A.Arbing, I.Pashkov, N.Devore, G.S.Waldo, T.C.Terwilliger, T.O.Yeates. Engineering Novel Oligomeric Gfp Molecules For Synthetic Symmetrization Applications To Be Published.
Page generated: Wed Oct 9 19:18:42 2024

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