Atomistry » Nickel » PDB 4w6f-4z42 » 4w6f
Atomistry »
  Nickel »
    PDB 4w6f-4z42 »
      4w6f »

Nickel in PDB 4w6f: Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2

Protein crystallography data

The structure of Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2, PDB code: 4w6f was solved by D.J.Leibly, G.S.Waldo, T.O.Yeates, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 84.34 / 2.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.980, 121.980, 140.090, 90.00, 90.00, 120.00
R / Rfree (%) 20.4 / 23.8

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2 (pdb code 4w6f). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2, PDB code: 4w6f:

Nickel binding site 1 out of 1 in 4w6f

Go back to Nickel Binding Sites List in 4w6f
Nickel binding site 1 out of 1 in the Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Full-Length Split Gfp Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni302

b:0.1
occ:1.00
N1 B:IMD305 2.1 0.5 0.9
N1 B:IMD303 2.5 0.3 1.0
NE2 B:HIS21 2.5 92.3 1.0
N1 B:IMD301 2.6 0.9 0.9
C5 B:IMD301 2.8 0.4 0.9
N1 B:IMD304 2.8 0.4 1.0
C2 B:IMD305 2.9 0.0 0.9
C5 B:IMD303 2.9 0.4 1.0
CD2 B:HIS21 3.1 92.2 1.0
C5 B:IMD305 3.1 0.8 0.9
C5 B:IMD304 3.5 0.4 1.0
CE1 B:HIS21 3.5 90.5 1.0
C2 B:IMD304 3.6 0.6 1.0
C2 B:IMD303 3.6 0.5 1.0
C2 B:IMD301 3.7 0.8 0.9
C4 B:IMD301 4.0 0.4 0.9
N3 B:IMD305 4.0 0.3 0.9
C4 B:IMD305 4.1 0.1 0.9
C4 B:IMD303 4.1 0.2 1.0
CG B:HIS21 4.2 85.6 1.0
N3 B:IMD301 4.4 0.1 0.9
ND1 B:HIS21 4.4 86.8 1.0
N3 B:IMD303 4.5 0.1 1.0
C4 B:IMD304 4.5 0.1 1.0
N3 B:IMD304 4.6 0.8 1.0

Reference:

D.J.Leibly, M.A.Arbing, I.Pashkov, N.Devore, G.S.Waldo, T.C.Terwilliger, T.O.Yeates. Engineering Novel Oligomeric Gfp Molecules For Synthetic Symmetrization Applications To Be Published.
Page generated: Wed Oct 9 19:18:42 2024

Last articles

Cl in 9KMM
Cl in 9KML
Cl in 9KMK
Cl in 9KMI
Cl in 9KMJ
Cl in 9JWX
Cl in 9JMY
Cl in 9JDG
Cl in 9JDA
Cl in 9JD9
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy