Nickel in PDB 5cb9: Crystal Structure of C-As Lyase with Mercaptoethonal

The structure of Crystal Structure of C-As Lyase with Mercaptoethonal, PDB code: 5cb9 was solved by S.Venkadesh, M.Yoshinaga, B.Sankaran, P.Kandavelu, B.P.Rosen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.08 / 1.95
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	42.660, 42.660, 116.960, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 26.8

The structure of Crystal Structure of C-As Lyase with Mercaptoethonal also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Nickel atom in the Crystal Structure of C-As Lyase with Mercaptoethonal (pdb code 5cb9). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of C-As Lyase with Mercaptoethonal, PDB code: 5cb9:

Nickel binding site 1 out of 1 in the Crystal Structure of C-As Lyase with Mercaptoethonal


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of C-As Lyase with Mercaptoethonal within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni201 b:38.6 occ:0.26 O A:HOH331 2.0 49.8 1.0 OE2 A:GLU117 2.1 34.9 1.0 NE2 A:HIS65 2.1 34.8 1.0 NE2 A:GLN8 2.2 38.8 1.0 O A:HOH332 2.5 43.4 1.0 CE1 A:HIS65 2.7 33.7 1.0 O A:HOH326 3.0 43.0 1.0 CD A:GLN8 3.2 38.7 1.0 CD A:GLU117 3.3 30.3 1.0 CD2 A:HIS65 3.4 36.7 1.0 OE1 A:GLN8 3.5 54.1 1.0 ND1 A:HIS65 3.9 29.0 1.0 OE1 A:GLU117 4.0 38.4 1.0 O1 A:BME203 4.1 52.6 1.0 O A:HOH301 4.3 43.1 1.0 O A:HOH372 4.3 47.0 1.0 CG A:HIS65 4.3 29.9 1.0 CG A:GLU117 4.3 30.1 1.0 CG A:GLN8 4.5 31.6 1.0 O A:HOH386 4.6 46.1 1.0 C1 A:BME203 4.7 52.5 1.0 CB A:ALA10 4.8 26.6 1.0 CG2 A:VAL51 4.9 27.9 1.0 O A:HOH373 4.9 47.1 1.0

S.Venkadesh, M.Yoshinaga, B.Sankaran, P.Kandavelu, B.P.Rosen. Crystal Structure of C-As Lyase with Mercaptoethonal To Be Published.