Nickel in PDB 5ck0: BT4246

The structure of BT4246, PDB code: 5ck0 was solved by N.M.Koropatkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.23 / 2.00
Space group	P 6 2 2
Cell size a, b, c (Å), α, β, γ (°)	156.216, 156.216, 114.704, 90.00, 90.00, 120.00
R / Rfree (%)	18.7 / 22.7

The structure of BT4246 also contains other interesting chemical elements:

Potassium

(K)

2 atoms

The binding sites of Nickel atom in the BT4246 (pdb code 5ck0). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 3 binding sites of Nickel where determined in the BT4246, PDB code: 5ck0:
Jump to Nickel binding site number: 1; 2; 3;

Nickel binding site 1 out of 3 in the BT4246


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of BT4246 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni703 b:27.1 occ:1.00 O A:GLY237 3.0 11.4 1.0 O A:ASN261 3.1 14.3 1.0 O A:HOH1210 3.5 27.6 1.0 O A:HOH1225 3.7 30.0 1.0 O A:HOH1380 4.0 30.1 1.0 C A:GLY237 4.1 16.8 1.0 C A:ASN261 4.2 19.4 1.0 O A:HOH1374 4.4 19.6 1.0 O A:HOH1313 4.5 23.2 1.0 CA A:GLY237 4.7 11.1 1.0 N A:THR262 5.0 11.8 1.0 CA A:ASN261 5.0 18.6 1.0

Nickel binding site 2 out of 3 in the BT4246


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of BT4246 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni704 b:27.1 occ:1.00 O A:HOH1361 2.8 24.7 1.0 O A:VAL630 2.9 7.3 1.0 O A:MET636 3.1 10.5 1.0 O A:HOH1404 3.1 27.7 1.0 O A:ASN633 3.2 14.8 1.0 O A:PRO634 3.6 18.7 1.0 C A:PRO634 3.8 17.5 1.0 CA A:PRO634 3.9 20.9 1.0 O A:HOH1064 4.1 28.2 1.0 C A:VAL630 4.1 15.1 1.0 C A:ASN633 4.1 21.0 1.0 CG1 A:VAL630 4.1 18.0 1.0 C A:MET636 4.2 17.2 1.0 N A:MET636 4.3 12.7 1.0 N A:PRO634 4.4 19.3 1.0 CA A:MET636 4.7 14.1 1.0 N A:GLN635 4.7 16.8 1.0 CA A:VAL630 4.7 16.2 1.0 CB A:MET636 4.9 13.8 1.0

Nickel binding site 3 out of 3 in the BT4246


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of BT4246 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni705 b:27.1 occ:1.00 O A:PRO392 3.0 3.0 1.0 O A:ASP395 3.0 3.8 1.0 O A:PHE398 3.1 5.8 1.0 O A:HOH1246 3.2 11.7 1.0 O A:THR399 3.4 9.3 1.0 O A:GLU393 3.4 10.4 1.0 C A:PHE398 4.0 11.8 1.0 C A:ASP395 4.0 8.5 1.0 C A:GLU393 4.0 12.2 1.0 C A:THR399 4.1 11.2 1.0 C A:PRO392 4.2 10.9 1.0 CA A:PRO400 4.3 14.7 1.0 N A:ASP395 4.4 8.0 1.0 CA A:GLU393 4.4 12.7 1.0 N A:PRO400 4.5 11.8 1.0 CB A:PHE398 4.6 6.9 1.0 CA A:PHE398 4.7 10.5 1.0 CA A:ASP395 4.7 7.8 1.0 C A:LYS394 4.8 7.0 1.0 N A:PHE398 4.8 9.0 1.0 N A:GLU393 4.8 9.1 1.0 N A:LYS394 4.8 6.5 1.0 N A:THR399 4.9 8.0 1.0 N A:LEU396 4.9 6.2 1.0 CD1 A:PHE398 5.0 6.9 1.0

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