Nickel in PDB 5lfz: T48 Deacetylase

The structure of T48 Deacetylase, PDB code: 5lfz was solved by U.Rothweiler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.84 / 1.56
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.090, 56.770, 76.860, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 20.5

The binding sites of Nickel atom in the T48 Deacetylase (pdb code 5lfz). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the T48 Deacetylase, PDB code: 5lfz:

Nickel binding site 1 out of 1 in the T48 Deacetylase


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of T48 Deacetylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni301 b:22.7 occ:0.54 O A:HOH435 1.9 36.7 1.0 OD1 A:ASP56 2.1 28.9 1.0 NE2 A:HIS109 2.1 33.8 1.0 NE2 A:HIS105 2.1 22.2 1.0 O A:HOH408 2.1 31.2 1.0 O A:HOH477 2.1 36.6 1.0 CD2 A:HIS109 3.0 29.7 1.0 CG A:ASP56 3.0 28.3 1.0 CD2 A:HIS105 3.0 25.0 1.0 CE1 A:HIS105 3.1 23.4 1.0 CE1 A:HIS109 3.1 31.2 1.0 OD2 A:ASP56 3.2 32.3 1.0 OD2 A:ASP55 3.9 26.5 1.0 CB A:ASP55 4.0 23.1 1.0 CG A:HIS109 4.2 30.8 1.0 CG A:HIS105 4.2 23.9 1.0 ND1 A:HIS109 4.2 33.3 1.0 ND1 A:HIS105 4.2 27.1 1.0 NE2 A:HIS196 4.3 27.8 1.0 CB A:ASP56 4.4 26.6 1.0 CG A:ASP55 4.4 23.7 1.0 CD2 A:HIS196 4.4 26.4 1.0 N A:ASP56 4.8 21.4 1.0 CA A:PRO145 4.8 26.4 1.0 CA A:ASP56 4.8 23.4 1.0 N A:TYR146 4.9 31.1 1.0

T.R.Tuveng, U.Rothweiler, G.Udatha, G.Vaaje-Kolstad, A.Smalas, V.G.H.Eijsink. Structure and Function of A CE4 Deacetylase Isolated From A Marine Environment. Plos One V. 12 87544 2017.
ISSN: ESSN 1932-6203
PubMed: 29107991
DOI: 10.1371/JOURNAL.PONE.0187544