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Nickel in PDB 5mg0: Structure of Pas-Gaf Fragment of Deinococcus Phytochrome By Serial Femtosecond Crystallography

Enzymatic activity of Structure of Pas-Gaf Fragment of Deinococcus Phytochrome By Serial Femtosecond Crystallography

All present enzymatic activity of Structure of Pas-Gaf Fragment of Deinococcus Phytochrome By Serial Femtosecond Crystallography:
2.7.13.3;

Protein crystallography data

The structure of Structure of Pas-Gaf Fragment of Deinococcus Phytochrome By Serial Femtosecond Crystallography, PDB code: 5mg0 was solved by E.S.Burgie, F.D.Fuller, S.Gul, M.D.Miller, I.D.Young, A.S.Brewster, J.Clinger, P.Aller, P.Braeuer, C.Hutchison, R.Alonso-Mori, J.Kern, V.K.Yachandra, J.Yano, N.K.Sauter, G.N.Phillips Jr., R.D.Vierstra, A.M.Orville, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.24 / 1.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 90.535, 53.385, 80.912, 90.00, 116.32, 90.00
R / Rfree (%) 17.2 / 20.3

Other elements in 5mg0:

The structure of Structure of Pas-Gaf Fragment of Deinococcus Phytochrome By Serial Femtosecond Crystallography also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of Pas-Gaf Fragment of Deinococcus Phytochrome By Serial Femtosecond Crystallography (pdb code 5mg0). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of Pas-Gaf Fragment of Deinococcus Phytochrome By Serial Femtosecond Crystallography, PDB code: 5mg0:

Nickel binding site 1 out of 1 in 5mg0

Go back to Nickel Binding Sites List in 5mg0
Nickel binding site 1 out of 1 in the Structure of Pas-Gaf Fragment of Deinococcus Phytochrome By Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Pas-Gaf Fragment of Deinococcus Phytochrome By Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni402

b:94.7
occ:1.00
NE2 A:HIS325 1.9 0.2 1.0
CE1 A:HIS325 2.9 0.7 1.0
CD2 A:HIS325 2.9 0.5 1.0
O1 A:EDO405 3.6 78.4 1.0
ND1 A:HIS325 4.0 0.6 1.0
CG A:HIS325 4.1 0.5 1.0

Reference:

F.D.Fuller, S.Gul, R.Chatterjee, E.S.Burgie, I.D.Young, H.Lebrette, V.Srinivas, A.S.Brewster, T.Michels-Clark, J.A.Clinger, B.Andi, M.Ibrahim, E.Pastor, C.De Lichtenberg, R.Hussein, C.J.Pollock, M.Zhang, C.A.Stan, T.Kroll, T.Fransson, C.Weninger, M.Kubin, P.Aller, L.Lassalle, P.Brauer, M.D.Miller, M.Amin, S.Koroidov, C.G.Roessler, M.Allaire, R.G.Sierra, P.T.Docker, J.M.Glownia, S.Nelson, J.E.Koglin, D.Zhu, M.Chollet, S.Song, H.Lemke, M.Liang, D.Sokaras, R.Alonso-Mori, A.Zouni, J.Messinger, U.Bergmann, A.K.Boal, J.M.Bollinger, C.Krebs, M.Hogbom, G.N.Phillips, R.D.Vierstra, N.K.Sauter, A.M.Orville, J.Kern, V.K.Yachandra, J.Yano. Drop-on-Demand Sample Delivery For Studying Biocatalysts in Action at X-Ray Free-Electron Lasers. Nat. Methods V. 14 443 2017.
ISSN: ESSN 1548-7105
PubMed: 28250468
DOI: 10.1038/NMETH.4195
Page generated: Thu Oct 10 06:39:29 2024

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