Nickel in PDB 5nfk: Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Nickel.

The structure of Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Nickel., PDB code: 5nfk was solved by T.Roret, C.Didierjean, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.42 / 0.98
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	30.887, 31.917, 62.833, 90.00, 90.00, 90.00
R / Rfree (%)	10.1 / 11.3

The binding sites of Nickel atom in the Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Nickel. (pdb code 5nfk). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Nickel., PDB code: 5nfk:

Nickel binding site 1 out of 1 in the Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Nickel.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Nickel. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni100 b:5.6 occ:0.91 NE2 A:HIS67 2.1 5.7 1.0 NE2 A:HIS32 2.1 5.1 1.0 O A:HOH213 2.1 7.1 0.9 O A:HOH205 2.1 8.6 0.9 O A:HOH266 2.1 9.4 1.0 O A:HOH267 2.1 13.5 0.9 CE1 A:HIS32 3.0 5.4 1.0 CD2 A:HIS67 3.0 5.5 1.0 CE1 A:HIS67 3.1 6.5 1.0 CD2 A:HIS32 3.1 4.7 1.0 HE1 A:HIS32 3.2 6.5 1.0 HD2 A:HIS67 3.2 6.6 1.0 HE1 A:HIS67 3.3 7.8 1.0 HD2 A:HIS32 3.3 5.6 1.0 HB1 A:ALA68 3.9 6.6 1.0 OD2 A:ASP31 4.0 12.7 1.0 O A:HOH304 4.0 35.5 1.0 OD1 A:ASP31 4.0 9.7 1.0 ND1 A:HIS32 4.2 5.2 1.0 ND1 A:HIS67 4.2 5.9 1.0 CG A:HIS67 4.2 5.4 1.0 CG A:HIS32 4.3 4.5 1.0 CG A:ASP31 4.4 9.5 1.0 O A:HOH283 4.7 29.6 0.8 CB A:ALA68 4.8 5.5 1.0 HD1 A:HIS32 4.9 6.3 1.0 HA A:ALA68 4.9 5.4 1.0 HD1 A:HIS67 5.0 7.1 1.0

T.Roret, C.Didierjean. Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Nickel. To Be Published.