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Nickel in PDB 6ila: Two Glycerol Complexed Crystal Structure of Fructuronate-Tagaturonate Epimerase Uxae From Cohnella Laeviribosi

Enzymatic activity of Two Glycerol Complexed Crystal Structure of Fructuronate-Tagaturonate Epimerase Uxae From Cohnella Laeviribosi

All present enzymatic activity of Two Glycerol Complexed Crystal Structure of Fructuronate-Tagaturonate Epimerase Uxae From Cohnella Laeviribosi:
5.1.2.7;

Protein crystallography data

The structure of Two Glycerol Complexed Crystal Structure of Fructuronate-Tagaturonate Epimerase Uxae From Cohnella Laeviribosi, PDB code: 6ila was solved by M.Y.Choi, L.W.Kang, T.H.Ho, D.Q.Nguyen, I.H.Lee, J.H.Lee, Y.S.Park, H.J.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.43 / 2.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 135.269, 51.998, 73.974, 90.00, 100.66, 90.00
R / Rfree (%) 21.3 / 28.2

Nickel Binding Sites:

The binding sites of Nickel atom in the Two Glycerol Complexed Crystal Structure of Fructuronate-Tagaturonate Epimerase Uxae From Cohnella Laeviribosi (pdb code 6ila). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Two Glycerol Complexed Crystal Structure of Fructuronate-Tagaturonate Epimerase Uxae From Cohnella Laeviribosi, PDB code: 6ila:

Nickel binding site 1 out of 1 in 6ila

Go back to Nickel Binding Sites List in 6ila
Nickel binding site 1 out of 1 in the Two Glycerol Complexed Crystal Structure of Fructuronate-Tagaturonate Epimerase Uxae From Cohnella Laeviribosi


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Two Glycerol Complexed Crystal Structure of Fructuronate-Tagaturonate Epimerase Uxae From Cohnella Laeviribosi within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni501

b:85.3
occ:1.00
 NE2 A:HIS160 2.2 56.3 1.0
O2 A:GOL503 2.5 58.7 1.0
ND1 A:HIS342 2.5 39.3 1.0
CD2 A:HIS160 2.8 55.0 1.0
C2 A:GOL503 2.9 58.0 1.0
C3 A:GOL503 3.1 58.7 1.0
O3 A:GOL503 3.2 55.5 1.0
O2 A:GOL504 3.3 79.5 1.0
CE1 A:HIS342 3.3 39.9 1.0
CE1 A:HIS160 3.3 51.7 1.0
CG A:HIS342 3.4 36.9 1.0
OD2 A:ASP159 3.5 57.0 1.0
CB A:HIS342 3.8 36.7 1.0
OD2 A:ASP272 3.9 54.0 1.0
CG A:HIS160 4.1 54.4 1.0
OD1 A:ASP159 4.1 52.5 1.0
CG A:ASP159 4.2 52.2 1.0
ND1 A:HIS160 4.3 52.9 1.0
NE2 A:HIS342 4.3 38.9 1.0
C1 A:GOL503 4.3 59.7 1.0
CD2 A:HIS342 4.4 39.3 1.0
C2 A:GOL504 4.6 69.5 1.0
O3 A:GOL504 4.6 77.7 1.0
CD A:LYS365 4.7 37.1 1.0
CA A:HIS342 4.7 36.6 1.0
CG A:ASP272 4.8 52.0 1.0
N A:SER343 4.9 44.5 1.0
C3 A:GOL504 5.0 72.5 1.0
OD1 A:ASP272 5.0 53.4 1.0

Reference:

M.Y.Choi, L.W.Kang, T.H.Ho, D.Q.Nguyen, I.H.Lee, J.H.Lee, Y.S.Park, H.J.Park. Crystal Structure of Fructuronate-Tagaturonate Epimerase Uxae From Cohnella Laeviribosi To Be Published.
Page generated: Thu Oct 10 08:32:37 2024

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