Atomistry » Nickel » PDB 6ikt-6lrx » 6jfg
Atomistry »
  Nickel »
    PDB 6ikt-6lrx »
      6jfg »

Nickel in PDB 6jfg: K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus

Enzymatic activity of K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus

All present enzymatic activity of K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus:
3.5.1.88;

Protein crystallography data

The structure of K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus, PDB code: 6jfg was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.99 / 2.60
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 96.908, 120.320, 47.571, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 26.5

Nickel Binding Sites:

The binding sites of Nickel atom in the K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus (pdb code 6jfg). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus, PDB code: 6jfg:

Nickel binding site 1 out of 1 in 6jfg

Go back to Nickel Binding Sites List in 6jfg
Nickel binding site 1 out of 1 in the K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:96.8
occ:1.00
 SG A:CYS111 2.0 35.9 1.0
NE2 A:HIS154 2.4 41.7 1.0
NE2 A:HIS158 2.4 47.5 1.0
O1 A:K1U202 2.6 83.7 1.0
CB A:CYS111 2.9 38.3 1.0
O2 A:K1U202 3.1 0.3 1.0
C8 A:K1U202 3.2 0.4 1.0
CE1 A:HIS158 3.2 45.2 1.0
O A:HOH311 3.2 48.1 1.0
CE1 A:HIS154 3.3 38.8 1.0
CD2 A:HIS154 3.3 39.4 1.0
CA A:CYS111 3.5 40.3 1.0
CD2 A:HIS158 3.5 47.5 1.0
NE2 A:GLN65 3.6 40.2 1.0
CD A:GLN65 4.2 41.0 1.0
O A:HOH312 4.3 41.3 1.0
C A:CYS111 4.3 44.4 1.0
O A:GLY110 4.4 49.6 1.0
OE1 A:GLN65 4.4 39.2 1.0
ND1 A:HIS158 4.4 43.2 1.0
ND1 A:HIS154 4.4 39.3 1.0
CG A:HIS154 4.5 37.7 1.0
N A:LEU112 4.5 44.4 1.0
C24 A:K1U202 4.6 0.1 1.0
CG A:HIS158 4.6 43.3 1.0
N A:CYS111 4.6 43.1 1.0
OE2 A:GLU155 4.7 76.3 1.0
CE A:MET163 4.9 59.9 1.0
C A:GLY110 4.9 43.9 1.0
C9 A:K1U202 4.9 0.6 1.0
C1 A:K1U202 5.0 0.0 1.0
OE1 A:GLU155 5.0 63.0 1.0
CD2 A:PHE164 5.0 48.0 1.0

Reference:

I.H.Lee, T.H.Ho, L.W.Kang. K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus To Be Published.
Page generated: Thu Oct 10 08:34:03 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy