Nickel in PDB 6jfg: K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus

Enzymatic activity of K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus

All present enzymatic activity of K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus:
3.5.1.88;

Protein crystallography data

The structure of K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus, PDB code: 6jfg was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	49.99 / 2.60
*Space group*	C 2 2 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	96.908, 120.320, 47.571, 90.00, 90.00, 90.00
*R / R_free (%)*	19.9 / 26.5

Nickel Binding Sites:

The binding sites of Nickel atom in the K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus (pdb code 6jfg). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus, PDB code: 6jfg:

Nickel binding site 1 out of 1 in 6jfg

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Nickel Binding Sites List in 6jfg

Nickel binding site 1 out of 1 in the K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus

Mono view

Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ni201 b:96.8 occ:1.00	SG	A:CYS111	2.0	35.9	1.0
	NE2	A:HIS154	2.4	41.7	1.0
	NE2	A:HIS158	2.4	47.5	1.0
	O1	A:K1U202	2.6	83.7	1.0
	CB	A:CYS111	2.9	38.3	1.0
	O2	A:K1U202	3.1	0.3	1.0
	C8	A:K1U202	3.2	0.4	1.0
	CE1	A:HIS158	3.2	45.2	1.0
	O	A:HOH311	3.2	48.1	1.0
	CE1	A:HIS154	3.3	38.8	1.0
	CD2	A:HIS154	3.3	39.4	1.0
	CA	A:CYS111	3.5	40.3	1.0
	CD2	A:HIS158	3.5	47.5	1.0
	NE2	A:GLN65	3.6	40.2	1.0
	CD	A:GLN65	4.2	41.0	1.0
	O	A:HOH312	4.3	41.3	1.0
	C	A:CYS111	4.3	44.4	1.0
	O	A:GLY110	4.4	49.6	1.0
	OE1	A:GLN65	4.4	39.2	1.0
	ND1	A:HIS158	4.4	43.2	1.0
	ND1	A:HIS154	4.4	39.3	1.0
	CG	A:HIS154	4.5	37.7	1.0
	N	A:LEU112	4.5	44.4	1.0
	C24	A:K1U202	4.6	0.1	1.0
	CG	A:HIS158	4.6	43.3	1.0
	N	A:CYS111	4.6	43.1	1.0
	OE2	A:GLU155	4.7	76.3	1.0
	CE	A:MET163	4.9	59.9	1.0
	C	A:GLY110	4.9	43.9	1.0
	C9	A:K1U202	4.9	0.6	1.0
	C1	A:K1U202	5.0	0.0	1.0
	OE1	A:GLU155	5.0	63.0	1.0
	CD2	A:PHE164	5.0	48.0	1.0

Reference:

I.H.Lee, T.H.Ho, L.W.Kang. K1U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus To Be Published.

Page generated: Thu Oct 10 08:34:03 2024

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