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Nickel in PDB 6jfs: K4U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus

Enzymatic activity of K4U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus

All present enzymatic activity of K4U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus:
3.5.1.88;

Protein crystallography data

The structure of K4U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus, PDB code: 6jfs was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.64 / 2.25
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 95.760, 120.396, 47.208, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 26.8

Nickel Binding Sites:

The binding sites of Nickel atom in the K4U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus (pdb code 6jfs). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the K4U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus, PDB code: 6jfs:

Nickel binding site 1 out of 1 in 6jfs

Go back to Nickel Binding Sites List in 6jfs
Nickel binding site 1 out of 1 in the K4U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of K4U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:72.6
occ:1.00
 SG A:CYS111 1.7 39.2 1.0
O2 A:LHY202 2.6 74.9 1.0
CB A:CYS111 2.7 40.2 1.0
NE2 A:HIS158 2.7 30.8 1.0
NE2 A:HIS154 2.8 32.1 1.0
O1 A:LHY202 2.9 96.4 1.0
CA A:CYS111 3.2 39.1 1.0
CE1 A:HIS158 3.4 33.2 1.0
NE2 A:GLN65 3.4 27.1 1.0
O A:HOH316 3.5 43.1 1.0
N2 A:LHY202 3.6 85.9 1.0
C1 A:LHY202 3.6 94.9 1.0
CE1 A:HIS154 3.6 33.0 1.0
CD2 A:HIS154 3.7 32.2 1.0
CD2 A:HIS158 3.9 30.7 1.0
C A:CYS111 4.0 39.6 1.0
N A:LEU112 4.2 37.9 1.0
O A:GLY110 4.3 42.7 1.0
CD A:GLN65 4.3 32.0 1.0
N A:CYS111 4.4 39.8 1.0
OE1 A:GLN65 4.6 29.8 1.0
ND1 A:HIS158 4.7 33.7 1.0
N A:SER113 4.7 42.0 1.0
N A:LHY202 4.8 0.9 1.0
C A:GLY110 4.8 40.1 1.0
ND1 A:HIS154 4.8 31.3 1.0
CG A:HIS154 4.9 31.7 1.0
CG A:HIS158 4.9 31.9 1.0
CD2 A:PHE164 4.9 32.1 1.0
O A:HOH319 4.9 33.4 1.0

Reference:

I.H.Lee, T.H.Ho, L.W.Kang. K4U Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus To Be Published.
Page generated: Thu Oct 10 08:34:49 2024

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