Nickel in PDB 6kdd: Endoglucanase

The structure of Endoglucanase, PDB code: 6kdd was solved by S.Yu, C.Liuqing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.73 / 1.92
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.138, 54.895, 128.166, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 21.2

The binding sites of Nickel atom in the Endoglucanase (pdb code 6kdd). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Endoglucanase, PDB code: 6kdd:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Endoglucanase


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Endoglucanase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni401 b:46.5 occ:1.00 CD2 A:HIS67 2.2 24.7 1.0 NE2 A:HIS67 3.0 28.1 1.0 CG A:HIS67 3.4 25.4 1.0 CB A:HIS67 4.1 26.1 1.0 CE1 A:HIS67 4.2 21.1 1.0 O A:ALA66 4.2 25.5 1.0 ND1 A:HIS67 4.4 26.1 1.0 CA A:HIS67 4.5 31.3 1.0 OD2 A:ASP77 4.6 62.7 1.0 O A:HOH576 5.0 26.0 1.0

Nickel binding site 2 out of 2 in the Endoglucanase


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Endoglucanase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni402 b:41.6 occ:1.00 ND1 A:HIS86 2.1 24.6 1.0 O A:HOH587 2.6 53.1 1.0 O A:HOH566 2.8 43.4 1.0 CE1 A:HIS86 3.1 24.7 1.0 CG A:HIS86 3.2 22.2 1.0 CB A:HIS86 3.5 20.1 1.0 O A:HOH571 4.2 37.4 1.0 CA A:HIS86 4.2 19.3 1.0 NE2 A:HIS86 4.2 25.4 1.0 CD2 A:HIS86 4.3 23.2 1.0

S.Yu, S.Yu, C.Liuqing. N/A N/A.