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Nickel in PDB 6p8o: Structure of P. Aeruginosa ATCC27853 HORMA2-Deltac

Protein crystallography data

The structure of Structure of P. Aeruginosa ATCC27853 HORMA2-Deltac, PDB code: 6p8o was solved by Q.Ye, K.D.Corbett, R.K.Lau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.09 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 65.421, 30.585, 74.911, 90.00, 101.57, 90.00
R / Rfree (%) 19.1 / 20.8

Other elements in 6p8o:

The structure of Structure of P. Aeruginosa ATCC27853 HORMA2-Deltac also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of P. Aeruginosa ATCC27853 HORMA2-Deltac (pdb code 6p8o). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of P. Aeruginosa ATCC27853 HORMA2-Deltac, PDB code: 6p8o:

Nickel binding site 1 out of 1 in 6p8o

Go back to Nickel Binding Sites List in 6p8o
Nickel binding site 1 out of 1 in the Structure of P. Aeruginosa ATCC27853 HORMA2-Deltac


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of P. Aeruginosa ATCC27853 HORMA2-Deltac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:30.3
occ:1.00
NE2 A:HIS11 2.1 26.2 1.0
O A:HOH384 2.1 35.8 1.0
O A:HOH367 2.1 40.2 1.0
O A:HOH381 2.1 44.3 1.0
CE1 A:HIS11 3.0 44.2 1.0
CD2 A:HIS11 3.1 31.6 1.0
HE1 A:HIS11 3.1 53.0 1.0
HD2 A:HIS11 3.3 37.9 1.0
ND1 A:HIS11 4.1 46.0 1.0
CG A:HIS11 4.2 24.1 1.0
HE2 A:TYR15 4.3 49.6 1.0
O A:HOH389 4.5 37.2 1.0
HB3 A:ASP89 4.5 40.5 1.0
HB2 A:ASP89 4.7 40.5 1.0
HD1 A:HIS11 4.9 55.2 1.0

Reference:

Q.Ye, R.K.Lau, I.T.Mathews, E.A.Birkholz, J.D.Watrous, C.S.Azimi, J.Pogliano, M.Jain, K.D.Corbett. Horma Domain Proteins and A TRIP13-Like Atpase Regulate Bacterial Cgas-Like Enzymes to Mediate Bacteriophage Immunity To Be Published.
Page generated: Thu Oct 10 08:45:23 2024

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