Nickel in PDB 6ruc: The 3D Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough at 1.20 Angstrom Resolution

Enzymatic activity of The 3D Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough at 1.20 Angstrom Resolution

Protein crystallography data

Other elements in 6ruc:

Nickel Binding Sites:

Nickel binding site 1 out of 1 in 6ruc

Nickel Binding Sites List in 6ruc

Nickel binding site 1 out of 1 in the The 3D Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough at 1.20 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The 3D Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough at 1.20 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni502 b:12.8 occ:0.86 SG B:CSD75 2.1 10.4 0.2 S B:H2S504 2.1 14.8 0.8 SG B:CYS492 2.3 10.1 1.0 SG B:CYS78 2.3 11.3 1.0 SE B:SEC489 2.4 12.0 0.5 SE B:SEC489 2.4 13.5 0.3 SG B:CSD75 2.5 13.0 0.8 FE B:FCO501 2.5 10.9 1.0 OD1 B:CSD75 2.7 10.7 0.2 HB2 B:SEC489 2.9 16.7 0.2 HB2 B:CSD75 3.0 11.8 0.2 HB2 B:CSD75 3.0 12.4 0.8 OD2 B:CSD75 3.1 11.2 0.2 CB B:CSD75 3.1 9.9 0.2 CB B:CSD75 3.1 10.3 0.8 SE B:SEC489 3.1 15.7 0.2 HB3 B:CSD75 3.2 12.4 0.8 HB3 B:CYS78 3.4 11.7 1.0 HB2 B:CYS492 3.4 11.0 1.0 C1 B:FCO501 3.4 11.0 1.0 H B:CYS78 3.4 10.6 1.0 HB3 B:CSD75 3.4 11.8 0.2 CB B:SEC489 3.4 13.9 0.2 CB B:CYS78 3.5 9.7 1.0 C2 B:FCO501 3.5 9.2 1.0 CB B:CYS492 3.5 9.2 1.0 HB2 B:SEC489 3.5 12.1 0.5 HB3 B:SEC489 3.6 16.7 0.2 HB3 B:SEC489 3.6 14.8 0.3 CB B:SEC489 3.6 10.1 0.5 CB B:SEC489 3.7 12.3 0.3 HB B:VAL77 3.8 11.3 1.0 N B:CYS78 4.0 8.9 1.0 H B:CYS492 4.0 10.3 1.0 HB3 B:SEC489 4.0 12.1 0.5 HD2 B:ARG422 4.0 11.1 1.0 HE2 B:HIS82 4.1 12.2 1.0 HB3 B:CYS492 4.1 11.0 1.0 C3 B:FCO501 4.2 11.4 1.0 HB2 B:CYS78 4.2 11.7 1.0 HB2 B:SEC489 4.2 14.8 0.3 N1 B:FCO501 4.3 10.9 1.0 CA B:CYS78 4.3 8.9 1.0 N2 B:FCO501 4.4 9.4 1.0 CA B:CSD75 4.5 9.7 0.2 CA B:CYS492 4.5 8.5 1.0 HH11 B:ARG422 4.5 13.4 1.0 N B:CYS492 4.5 8.6 1.0 CA B:CSD75 4.6 9.2 0.8 H B:VAL77 4.6 10.3 1.0 HA B:CYS492 4.6 10.2 1.0 CB B:VAL77 4.8 9.4 1.0 CD B:ARG422 4.8 9.3 1.0 HA B:CSD75 4.8 11.7 0.2 HD2 B:HIS82 4.8 11.9 1.0 NE2 B:HIS82 4.8 10.2 1.0 HG3 B:GLU28 4.9 13.2 1.0 CA B:SEC489 4.9 11.9 0.2 O B:SEC489 4.9 10.8 0.3 CA B:SEC489 4.9 10.0 0.5 HD3 B:ARG422 4.9 11.1 1.0 NH1 B:ARG422 4.9 11.2 1.0 C B:VAL77 5.0 8.8 1.0 HA B:CSD75 5.0 11.0 0.8 C B:CSD75 5.0 9.8 0.2 HG21 B:ILE74 5.0 11.6 1.0

Reference: