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Nickel in PDB 6s5i: Structure of the Lausanne Variant of Myxoma Virus M062 Protein

Protein crystallography data

The structure of Structure of the Lausanne Variant of Myxoma Virus M062 Protein, PDB code: 6s5i was solved by P.O'byrne, A.R.Khan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.41 / 2.45
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 94.827, 94.827, 44.136, 90, 90, 120
R / Rfree (%) 21.1 / 26.6

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of the Lausanne Variant of Myxoma Virus M062 Protein (pdb code 6s5i). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of the Lausanne Variant of Myxoma Virus M062 Protein, PDB code: 6s5i:

Nickel binding site 1 out of 1 in 6s5i

Go back to Nickel Binding Sites List in 6s5i
Nickel binding site 1 out of 1 in the Structure of the Lausanne Variant of Myxoma Virus M062 Protein


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Lausanne Variant of Myxoma Virus M062 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:117.8
occ:1.00
N A:SER-1 2.1 112.1 1.0
ND1 A:HIS0 2.2 123.5 1.0
N A:HIS0 2.2 119.2 1.0
N A:GLY-2 2.4 115.5 1.0
C A:GLY-2 2.8 115.8 1.0
C A:SER-1 2.8 114.5 1.0
CA A:SER-1 2.9 111.2 1.0
CE1 A:HIS0 3.0 127.5 1.0
CA A:GLY-2 3.1 111.9 1.0
CG A:HIS0 3.2 117.4 1.0
CA A:HIS0 3.2 117.4 1.0
N A:MET1 3.5 122.3 1.0
CB A:HIS0 3.6 112.7 1.0
C A:HIS0 3.8 115.4 1.0
O A:GLY-2 3.8 124.0 1.0
O A:SER-1 3.9 117.2 1.0
NE2 A:HIS0 4.1 124.6 1.0
CB A:SER-1 4.1 114.6 1.0
CD2 A:HIS0 4.2 124.2 1.0
OG A:SER-1 4.3 115.3 1.0
CG A:MET1 4.4 132.2 1.0
CA A:MET1 4.6 118.5 1.0
CB A:MET1 4.6 121.7 1.0
O A:HIS0 5.0 105.6 1.0

Reference:

P.O'byrne, A.R.Khan. Structure of the Lausanne Variant of Myxoma Virus M062 Protein To Be Published.
Page generated: Thu Oct 10 08:52:13 2024

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