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Nickel in PDB 6sbp: Plant Cysteine Oxidase PCO5 From Arabidopsis Thaliana

Enzymatic activity of Plant Cysteine Oxidase PCO5 From Arabidopsis Thaliana

All present enzymatic activity of Plant Cysteine Oxidase PCO5 From Arabidopsis Thaliana:
1.13.11.20;

Protein crystallography data

The structure of Plant Cysteine Oxidase PCO5 From Arabidopsis Thaliana, PDB code: 6sbp was solved by M.D.White, E.Flashman, M.A.Mcdonough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.73 / 1.91
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.910, 68.910, 123.930, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 21.9

Nickel Binding Sites:

The binding sites of Nickel atom in the Plant Cysteine Oxidase PCO5 From Arabidopsis Thaliana (pdb code 6sbp). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Plant Cysteine Oxidase PCO5 From Arabidopsis Thaliana, PDB code: 6sbp:

Nickel binding site 1 out of 1 in 6sbp

Go back to Nickel Binding Sites List in 6sbp
Nickel binding site 1 out of 1 in the Plant Cysteine Oxidase PCO5 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Plant Cysteine Oxidase PCO5 From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni302

b:38.3
occ:1.00
NE2 A:HIS98 2.0 44.8 1.0
O A:HOH468 2.1 37.5 1.0
O A:HOH448 2.1 39.9 1.0
O A:HOH455 2.1 36.6 1.0
NE2 A:HIS164 2.1 39.0 1.0
NE2 A:HIS100 2.1 42.0 1.0
CE1 A:HIS100 3.0 41.1 1.0
CE1 A:HIS98 3.0 42.3 1.0
CE1 A:HIS164 3.0 39.6 1.0
CD2 A:HIS98 3.1 41.8 1.0
CD2 A:HIS164 3.2 39.6 1.0
CD2 A:HIS100 3.2 43.0 1.0
O A:HOH488 3.8 48.7 1.0
O A:HOH474 4.0 43.7 1.0
ND1 A:HIS98 4.1 43.4 1.0
ND1 A:HIS100 4.1 41.2 1.0
ND1 A:HIS164 4.2 34.4 1.0
CG A:HIS98 4.2 43.1 1.0
O A:HOH430 4.2 38.1 1.0
CG A:HIS164 4.3 37.6 1.0
O A:HOH416 4.3 36.4 1.0
CG A:HIS100 4.3 42.1 1.0
OH A:TYR182 4.3 46.3 1.0
CE2 A:PHE166 4.6 38.9 1.0
OD2 A:ASP176 4.8 49.5 1.0

Reference:

M.D.White, C.W.Levy, M.Edwards, E.Pires, K.Dunne, F.Licausi, M.A.Mcdonough, E.Flashman. Plant Cysteine Oxidase Isoforms From Arabidopsis Thaliana To Be Published.
Page generated: Thu Oct 10 08:52:46 2024

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