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Nickel in PDB 6wwx: Crystal Structure of Truncated Bacteriophage Hyaluronan Lyase Hylp in Complex with Unsaturated Hyaluronan Tetra-Saccharides

Enzymatic activity of Crystal Structure of Truncated Bacteriophage Hyaluronan Lyase Hylp in Complex with Unsaturated Hyaluronan Tetra-Saccharides

All present enzymatic activity of Crystal Structure of Truncated Bacteriophage Hyaluronan Lyase Hylp in Complex with Unsaturated Hyaluronan Tetra-Saccharides:
3.2.1.35;

Protein crystallography data

The structure of Crystal Structure of Truncated Bacteriophage Hyaluronan Lyase Hylp in Complex with Unsaturated Hyaluronan Tetra-Saccharides, PDB code: 6wwx was solved by C.Deivanayagam, N.Schormann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.68 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.535, 86.819, 168.646, 90, 90, 90
R / Rfree (%) 18.2 / 21

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Truncated Bacteriophage Hyaluronan Lyase Hylp in Complex with Unsaturated Hyaluronan Tetra-Saccharides (pdb code 6wwx). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Truncated Bacteriophage Hyaluronan Lyase Hylp in Complex with Unsaturated Hyaluronan Tetra-Saccharides, PDB code: 6wwx:

Nickel binding site 1 out of 1 in 6wwx

Go back to Nickel Binding Sites List in 6wwx
Nickel binding site 1 out of 1 in the Crystal Structure of Truncated Bacteriophage Hyaluronan Lyase Hylp in Complex with Unsaturated Hyaluronan Tetra-Saccharides


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Truncated Bacteriophage Hyaluronan Lyase Hylp in Complex with Unsaturated Hyaluronan Tetra-Saccharides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni401

b:77.8
occ:0.85
 NE2 B:HIS375 2.1 92.6 1.0
NE2 C:HIS375 2.1 90.2 1.0
NE2 A:HIS377 2.1 99.1 1.0
NE2 B:HIS377 2.1 104.2 1.0
NE2 A:HIS375 2.1 91.2 1.0
CE1 C:HIS375 2.8 87.3 1.0
CE1 B:HIS375 2.9 89.3 1.0
CD2 A:HIS377 3.0 97.1 1.0
CE1 B:HIS377 3.0 103.8 1.0
NE2 C:HIS377 3.0 110.0 1.0
CE1 A:HIS375 3.0 87.1 1.0
CE1 A:HIS377 3.1 98.0 1.0
CD2 B:HIS377 3.2 105.3 1.0
CD2 B:HIS375 3.2 90.6 1.0
CD2 A:HIS375 3.2 88.8 1.0
CD2 C:HIS375 3.3 88.8 1.0
CD2 C:HIS377 3.4 109.1 1.0
ND1 C:HIS375 4.0 85.5 1.0
ND1 B:HIS375 4.1 89.7 1.0
CG A:HIS377 4.2 97.5 1.0
ND1 B:HIS377 4.2 104.2 1.0
ND1 A:HIS375 4.2 86.7 1.0
ND1 A:HIS377 4.2 97.8 1.0
CG B:HIS375 4.2 89.4 1.0
CG B:HIS377 4.3 104.6 1.0
CE1 C:HIS377 4.3 110.3 1.0
CG C:HIS375 4.3 87.8 1.0
CG A:HIS375 4.3 88.8 1.0
CG C:HIS377 4.7 108.9 1.0

Reference:

J.H.Lee, N.Schormann, K.R.Rajashankar, C.Deivanaygam. Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism To Be Published.
Page generated: Thu Oct 10 08:57:42 2024

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