Nickel in PDB 7apv: Structure of Artemis/DCLRE1C/SNM1C in Complex with Ceftriaxone

The structure of Structure of Artemis/DCLRE1C/SNM1C in Complex with Ceftriaxone, PDB code: 7apv was solved by Y.Yosaatmadja, S.Goubin, J.A.Newman, S.M.M.Mukhopadhyay, A.A.Dannerfjord, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.69 / 1.95
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	35.880, 48.103, 48.252, 82.76, 76.29, 86.30
R / Rfree (%)	18.4 / 22.7

The structure of Structure of Artemis/DCLRE1C/SNM1C in Complex with Ceftriaxone also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Nickel atom in the Structure of Artemis/DCLRE1C/SNM1C in Complex with Ceftriaxone (pdb code 7apv). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of Artemis/DCLRE1C/SNM1C in Complex with Ceftriaxone, PDB code: 7apv:

Nickel binding site 1 out of 1 in the Structure of Artemis/DCLRE1C/SNM1C in Complex with Ceftriaxone


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Artemis/DCLRE1C/SNM1C in Complex with Ceftriaxone within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni504 b:17.7 occ:1.00 O2 A:9F2502 2.0 22.1 1.0 OD2 A:ASP136 2.2 12.1 1.0 ND1 A:HIS35 2.2 18.4 1.0 NE2 A:HIS115 2.2 14.2 1.0 O1 A:9F2502 2.2 23.2 1.0 NE2 A:HIS33 2.3 14.8 1.0 C7 A:9F2502 2.7 25.1 1.0 C6 A:9F2502 2.8 24.3 1.0 CE1 A:HIS35 3.1 19.1 1.0 CE1 A:HIS115 3.2 14.2 1.0 CD2 A:HIS115 3.2 14.3 1.0 CD2 A:HIS33 3.2 14.2 1.0 CG A:ASP136 3.2 12.1 1.0 CG A:HIS35 3.2 18.4 1.0 CE1 A:HIS33 3.3 14.7 1.0 CB A:HIS35 3.6 17.7 1.0 CB A:ASP136 3.6 12.4 1.0 NE2 A:HIS38 3.9 22.1 1.0 CD2 A:HIS38 4.0 20.5 1.0 N2 A:9F2502 4.1 28.1 1.0 NE2 A:HIS35 4.2 18.8 1.0 N1 A:9F2502 4.2 26.8 1.0 ND1 A:HIS115 4.2 14.6 1.0 CG A:HIS115 4.3 14.9 1.0 CD2 A:HIS35 4.3 19.6 1.0 OD1 A:ASP136 4.3 11.9 1.0 CG A:HIS33 4.3 13.7 1.0 ND1 A:HIS33 4.3 14.5 1.0 CE1 A:HIS319 4.8 17.9 1.0 CE1 A:HIS38 4.9 22.1 1.0

Y.Yosaatmadja, S.Goubin, J.A.Newman, S.M.M.Mukhopadhyay, A.A.Dannerfjord, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, O.Gileadi. Structure of Artemis/DCLRE1C/SNM1C in Complex with Ceftriaxone To Be Published.