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Nickel in PDB 7v4r: The Crystal Structure of Kfdv NS3H Bound with Pi

Enzymatic activity of The Crystal Structure of Kfdv NS3H Bound with Pi

All present enzymatic activity of The Crystal Structure of Kfdv NS3H Bound with Pi:
3.4.21.91; 3.6.1.15; 3.6.4.13;

Protein crystallography data

The structure of The Crystal Structure of Kfdv NS3H Bound with Pi, PDB code: 7v4r was solved by C.Y.Zhang, T.C.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.46 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.537, 53.091, 189.843, 90, 90, 90
R / Rfree (%) 22.4 / 25.7

Nickel Binding Sites:

The binding sites of Nickel atom in the The Crystal Structure of Kfdv NS3H Bound with Pi (pdb code 7v4r). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The Crystal Structure of Kfdv NS3H Bound with Pi, PDB code: 7v4r:

Nickel binding site 1 out of 1 in 7v4r

Go back to Nickel Binding Sites List in 7v4r
Nickel binding site 1 out of 1 in the The Crystal Structure of Kfdv NS3H Bound with Pi


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Crystal Structure of Kfdv NS3H Bound with Pi within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni701

b:111.2
occ:1.00
O2 A:PO4703 2.5 81.7 1.0
OG1 A:THR206 2.8 45.7 1.0
O2 A:PO4704 2.8 53.0 1.0
OE2 A:GLU291 2.8 45.3 1.0
O A:HOH837 3.1 49.0 1.0
O3 A:PO4703 3.2 81.2 1.0
P A:PO4703 3.4 78.8 1.0
CB A:THR206 3.6 51.9 1.0
CD A:GLU291 3.9 39.7 1.0
P A:PO4704 3.9 66.3 1.0
O1 A:PO4704 3.9 56.2 1.0
O4 A:PO4703 4.2 68.4 1.0
O3 A:PO4702 4.2 88.2 1.0
O4 A:PO4702 4.3 75.0 1.0
N A:THR206 4.3 56.9 1.0
OE1 A:GLU291 4.4 38.4 1.0
CA A:GLY420 4.5 37.6 1.0
CA A:THR206 4.6 53.9 1.0
O1 A:PO4703 4.6 80.2 1.0
O3 A:PO4704 4.6 36.5 1.0
OD2 A:ASP290 4.7 38.4 1.0
CG2 A:THR206 4.7 50.7 1.0
O A:HOH812 4.8 33.7 1.0
OD1 A:ASP290 4.8 39.2 1.0
P A:PO4702 4.8 96.3 1.0
NH2 A:ARG466 4.9 62.4 1.0

Reference:

C.Y.Zhang, T.C.Jin. The Crystal Structure of Kfdv NS3H Bound with Pi To Be Published.
Page generated: Thu Oct 10 09:27:30 2024

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