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Nickel in PDB 7y2x: Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 200 K

Enzymatic activity of Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 200 K

All present enzymatic activity of Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 200 K:
4.2.1.1;

Protein crystallography data

The structure of Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 200 K, PDB code: 7y2x was solved by C.U.Kim, J.K.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.18 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.49, 41.324, 71.965, 90, 104.04, 90
R / Rfree (%) 11.1 / 15.8

Nickel Binding Sites:

The binding sites of Nickel atom in the Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 200 K (pdb code 7y2x). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 200 K, PDB code: 7y2x:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 7y2x

Go back to Nickel Binding Sites List in 7y2x
Nickel binding site 1 out of 2 in the Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 200 K


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 200 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni301

b:9.3
occ:1.00
O1 A:MNP303 2.0 11.9 0.5
NE2 A:HIS94 2.1 9.6 1.0
ND1 A:HIS119 2.1 8.4 1.0
NE2 A:HIS96 2.1 8.7 1.0
O A:HOH425 2.1 13.4 1.0
O A:HOH405 2.2 15.6 0.5
O A:HOH542 2.3 13.3 1.0
CE1 A:HIS119 2.9 9.3 1.0
C1 A:MNP303 3.0 17.6 0.5
CE1 A:HIS94 3.1 9.6 1.0
CE1 A:HIS96 3.1 10.4 1.0
CD2 A:HIS94 3.1 10.3 1.0
CD2 A:HIS96 3.1 8.9 1.0
CG A:HIS119 3.2 8.1 1.0
O2 A:MNP303 3.5 17.5 0.5
O A:HOH401 3.6 30.6 0.5
CB A:HIS119 3.7 9.6 1.0
OE1 A:GLU106 4.0 14.4 1.0
O A:HOH530 4.1 20.9 1.0
NE2 A:HIS119 4.1 9.8 1.0
OG1 A:THR199 4.1 12.8 1.0
ND1 A:HIS94 4.2 9.9 1.0
ND1 A:HIS96 4.2 10.2 1.0
CG A:HIS94 4.2 9.2 1.0
CG A:HIS96 4.3 9.5 1.0
CD2 A:HIS119 4.3 9.0 1.0
C2 A:MNP303 4.3 20.7 0.5
O A:HOH487 4.8 30.8 1.0
CH2 A:TRP209 4.8 11.8 1.0
C6' A:MNP303 4.8 19.2 0.5
CD A:GLU106 4.9 12.4 1.0

Nickel binding site 2 out of 2 in 7y2x

Go back to Nickel Binding Sites List in 7y2x
Nickel binding site 2 out of 2 in the Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 200 K


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 200 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni302

b:50.0
occ:1.00
N A:HIS4 2.1 65.2 1.0
ND1 A:HIS4 2.2 34.4 1.0
CA A:HIS4 2.4 41.6 1.0
CG A:HIS4 2.9 57.4 1.0
CE1 A:HIS4 3.0 54.9 1.0
CB A:HIS4 3.2 48.9 1.0
N A:TRP5 3.5 24.8 1.0
C A:HIS4 3.6 44.0 1.0
CD2 A:HIS4 3.9 73.6 1.0
NE2 A:HIS4 3.9 66.9 1.0
CD1 A:TRP5 4.2 22.3 1.0
O A:HIS4 4.7 55.4 1.0
CA A:TRP5 4.7 21.9 1.0
CG A:TRP5 4.9 19.9 1.0
NE1 A:TRP5 5.0 25.2 1.0

Reference:

C.U.Kim, J.K.Kim. Temperature Series of Human Carbonic Anhydrase II with Photolysis of Caged CO2 To Be Published.
Page generated: Thu Oct 10 09:31:37 2024

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