Nickel in PDB 7z0t: Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Aerobic Preparation, Composite Structure)

Enzymatic activity of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Aerobic Preparation, Composite Structure)

All present enzymatic activity of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Aerobic Preparation, Composite Structure):
1.17.98.4;

Other elements in 7z0t:

The structure of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Aerobic Preparation, Composite Structure) also contains other interesting chemical elements:

Iron	(Fe)	34 atoms
Molybdenum	(Mo)	1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Aerobic Preparation, Composite Structure) (pdb code 7z0t). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Aerobic Preparation, Composite Structure), PDB code: 7z0t:

Nickel binding site 1 out of 1 in 7z0t

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Nickel Binding Sites List in 7z0t

Nickel binding site 1 out of 1 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Aerobic Preparation, Composite Structure)

Mono view

Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Aerobic Preparation, Composite Structure) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
E:Ni601 b:60.0 occ:1.00	SG	E:CYS244	2.2	42.4	1.0
	SG	E:CYS531	2.2	37.5	1.0
	FE	E:FCO602	2.3	39.2	1.0
	SG	E:CYS534	2.3	36.9	1.0
	SG	E:CYS241	2.3	47.4	1.0
	CB	E:CYS531	2.5	37.5	1.0
	C2	E:FCO602	2.8	39.2	1.0
	CB	E:CYS534	3.0	36.9	1.0
	C1	E:FCO602	3.4	39.2	1.0
	CB	E:CYS244	3.5	42.4	1.0
	N2	E:FCO602	3.6	39.2	1.0
	CB	E:CYS241	3.7	47.4	1.0
	CA	E:CYS531	4.0	37.5	1.0
	C3	E:FCO602	4.0	39.2	1.0
	CA	E:CYS534	4.2	36.9	1.0
	O	E:CYS531	4.3	37.5	1.0
	N	E:CYS534	4.3	36.9	1.0
	CD	E:ARG478	4.4	37.1	1.0
	N1	E:FCO602	4.4	39.2	1.0
	N	E:CYS244	4.5	42.4	1.0
	C	E:CYS531	4.6	37.5	1.0
	NE	E:ARG478	4.6	37.1	1.0
	CA	E:CYS244	4.6	42.4	1.0
	CZ	E:ARG478	4.8	37.1	1.0
	NH1	E:ARG478	4.9	37.1	1.0
	N	E:CYS531	5.0	37.5	1.0

Reference:

R.Steinhilper, G.Hoff, J.Heider, B.J.Murphy. Structure of the Membrane-Bound Formate Hydrogenlyase Complex From Escherichia Coli. Nat Commun V. 13 5395 2022.
ISSN: ESSN 2041-1723
PubMed: 36104349
DOI: 10.1038/S41467-022-32831-X

Page generated: Thu Oct 10 09:32:17 2024

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