Nickel in PDB 9myp: Structure of Patiria Miniata HOP1 Chromatin Binding Region

The structure of Structure of Patiria Miniata HOP1 Chromatin Binding Region, PDB code: 9myp was solved by A.R.Rodriguez, Q.Ye, J.Nguyen, K.Chau, K.D.Corbett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	82.95 / 1.84
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	38.654, 106.955, 131.402, 90, 90, 90
R / Rfree (%)	19.8 / 23.5

The structure of Structure of Patiria Miniata HOP1 Chromatin Binding Region also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

The binding sites of Nickel atom in the Structure of Patiria Miniata HOP1 Chromatin Binding Region (pdb code 9myp). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of Patiria Miniata HOP1 Chromatin Binding Region, PDB code: 9myp:

Nickel binding site 1 out of 1 in the Structure of Patiria Miniata HOP1 Chromatin Binding Region


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Patiria Miniata HOP1 Chromatin Binding Region within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni503 b:24.4 occ:1.00 NE2 A:HIS338 2.1 21.9 1.0 NE2 A:HIS340 2.1 20.7 1.0 NE2 C:HIS340 2.2 25.0 1.0 NE2 C:HIS338 2.2 23.5 1.0 CE1 A:HIS338 3.0 22.9 1.0 CE1 A:HIS340 3.1 22.4 1.0 CD2 A:HIS338 3.1 20.6 1.0 CD2 A:HIS340 3.2 24.4 1.0 CD2 C:HIS338 3.2 25.6 1.0 CE1 C:HIS340 3.2 21.9 1.0 CD2 C:HIS340 3.2 23.7 1.0 HE1 A:HIS338 3.2 27.5 1.0 HE1 A:HIS340 3.2 26.9 1.0 CE1 C:HIS338 3.2 28.1 1.0 HD2 A:HIS338 3.3 24.6 1.0 HD2 C:HIS338 3.3 30.8 1.0 HD2 A:HIS340 3.3 29.3 1.0 HE1 C:HIS340 3.4 26.3 1.0 HD2 C:HIS340 3.4 28.5 1.0 HE1 C:HIS338 3.4 33.8 1.0 ND1 A:HIS338 4.2 22.4 1.0 ND1 A:HIS340 4.2 19.2 1.0 CG A:HIS338 4.2 23.3 1.0 CG A:HIS340 4.3 23.3 1.0 ND1 C:HIS340 4.3 25.1 1.0 CG C:HIS338 4.3 25.5 1.0 CG C:HIS340 4.3 23.9 1.0 ND1 C:HIS338 4.3 25.4 1.0 HD1 A:TYR346 4.8 24.9 1.0 HD1 C:TYR346 4.8 29.0 1.0 HD1 A:HIS338 4.9 26.9 1.0 HD1 A:HIS340 5.0 23.1 1.0

A.A.Rodriguez, K.D.Corbett. Structure of Patiria Miniata HOP1 Chromatin Binding Region To Be Published.