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Nickel in PDB 1eje: Crystal Structure of An Fmn-Binding Protein

Protein crystallography data

The structure of Crystal Structure of An Fmn-Binding Protein, PDB code: 1eje was solved by D.Christendat, V.Saridakis, A.Bochkarev, C.Arrowsmith, A.M.Edwards, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.93 / 2.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 94.650, 94.650, 45.400, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 27.9

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of An Fmn-Binding Protein (pdb code 1eje). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of An Fmn-Binding Protein, PDB code: 1eje:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 1eje

Go back to Nickel Binding Sites List in 1eje
Nickel binding site 1 out of 2 in the Crystal Structure of An Fmn-Binding Protein


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of An Fmn-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:34.5
occ:1.00
O3P A:FMN401 2.0 30.5 1.0
OD1 A:ASN42 2.1 24.8 1.0
ND1 A:HIS68 2.1 36.2 1.0
O A:HOH1009 2.2 28.6 1.0
O A:HOH1008 2.3 31.6 1.0
OE1 A:GLU105 2.7 32.9 1.0
CG A:ASN42 3.0 26.9 1.0
CE1 A:HIS68 3.1 35.4 1.0
CG A:HIS68 3.2 32.4 1.0
ND2 A:ASN42 3.3 22.2 1.0
CB A:HIS68 3.5 26.7 1.0
P A:FMN401 3.5 32.1 1.0
CD A:GLU105 3.5 33.0 1.0
OE2 A:GLU105 3.5 28.8 1.0
O A:HOH1041 3.7 44.5 1.0
O1P A:FMN401 3.9 28.1 1.0
O A:ILE99 4.0 40.7 1.0
O A:HOH1005 4.1 40.0 1.0
NE2 A:HIS68 4.2 39.9 1.0
O5' A:FMN401 4.2 31.9 1.0
CD2 A:HIS68 4.3 33.2 1.0
CB A:ASN42 4.4 22.7 1.0
O2P A:FMN401 4.5 25.5 1.0
O A:HOH1065 4.7 53.6 1.0
O A:GLU103 4.8 37.6 1.0
O A:PRO100 4.8 42.1 1.0
CA A:HIS68 4.9 26.4 1.0
CG A:GLU105 4.9 33.3 1.0
C A:ILE99 4.9 42.2 1.0
CA A:ASN42 5.0 23.6 1.0

Nickel binding site 2 out of 2 in 1eje

Go back to Nickel Binding Sites List in 1eje
Nickel binding site 2 out of 2 in the Crystal Structure of An Fmn-Binding Protein


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of An Fmn-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni202

b:27.8
occ:1.00
ND1 A:HIS77 2.0 17.8 1.0
O A:HOH1030 2.3 35.7 1.0
CE1 A:HIS77 2.9 19.6 1.0
CG A:HIS77 3.1 19.7 1.0
CB A:HIS77 3.5 23.3 1.0
NE2 A:HIS77 4.1 20.7 1.0
CD2 A:HIS77 4.2 17.9 1.0
O A:THR76 4.8 23.6 1.0
CA A:HIS77 4.9 21.9 1.0

Reference:

D.Christendat, A.Yee, A.Dharamsi, Y.Kluger, A.Savchenko, J.R.Cort, V.Booth, C.D.Mackereth, V.Saridakis, I.Ekiel, G.Kozlov, K.L.Maxwell, N.Wu, L.P.Mcintosh, K.Gehring, M.A.Kennedy, A.R.Davidson, E.F.Pai, M.Gerstein, A.M.Edwards, C.H.Arrowsmith. Structural Proteomics of An Archaeon. Nat.Struct.Biol. V. 7 903 2000.
ISSN: ISSN 1072-8368
PubMed: 11017201
DOI: 10.1038/82823
Page generated: Wed Dec 16 01:11:29 2020

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