Chemical elements
  Nickel
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    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
      1g3v
      1gnu
      1gub
      1h04
      1h2a
      1h2r
      1h5q
      1h9r
      1h9u
      1hbk
      1hbm
      1hbn
      1hbo
      1hbu
      1he1
      1hj1
      1hyo
      1ia6
      1ia7
      1iae
      1icj
      1ie7
      1iid
      1iqy
      1j3y
      1j3z
      1j40
      1j41
      1j5y
      1j6p
      1jhj
      1jmx
      1jmz
      1jnx
      1jqk
      1jvl
      1jvn
      1k26
      1k2e
      1k8t
      1keg
      1kfg
      1kic
      1kie
      1kjt
      1krb
      1krc
      1lqy
      1mjg
      1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
    PDB 3hdp-3kvb
    PDB 3l1m-3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in the structure of Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida (pdb 1jmx)






The binding sites of Nickel atom in the structure of Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida (pdb code 1jmx). This binding sites where shown with 5.0 Angstroms radius around Nickel atom.
The 1jmx structure was solved by A.SATOH, I.MIYAHARA, K.HIROTSU, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)10.0-1.9
Space groupC121
a (A)167.210
b (A)92.370
c (A)79.300
alpha (°)90.00
beta (°)112.00
gamma (°)90.00
Rfactor (%)20.9
Rfree (%)26.7


Nickel Binding Sites:

Nickel binding site 1 out of 1 in 1jmx


Nickel binding site 1 out of 1 in 1jmx
Click to enlarge
stereopicture of Nickel binding site 1 out of 1 in 1jmx
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 1jmx. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu367, A: Val368, A: Thr476, A: Hoh2051, A: Hoh2068, A: Hoh2111, A: Hoh2151, A: Hoh2248,

conact list:


AtomAtomDistance (A)
NiOE1 A:Glu3671.93
NiCB A:Glu3674.58
NiOE2 A:Glu3673.37
NiCD A:Glu3672.98
NiCG A:Glu3674.30
NiCA A:Glu3674.70
NiO A:Val3684.08
NiN A:Val3684.36
NiC A:Val3685.00
NiO A:Thr4764.61
NiO A:Hoh20514.37
NiO A:Hoh20682.09
NiO A:Hoh21114.10
NiO A:Hoh21512.64
NiO A:Hoh22482.21

interactive model:




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