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Nickel in PDB 1jmx: Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida

Protein crystallography data

The structure of Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida, PDB code: 1jmx was solved by A.Satoh, I.Miyahara, K.Hirotsu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 167.210, 92.370, 79.300, 90.00, 112.00, 90.00
R / Rfree (%) 20.9 / 26.7

Other elements in 1jmx:

The structure of Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida (pdb code 1jmx). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida, PDB code: 1jmx:

Nickel binding site 1 out of 1 in 1jmx

Go back to Nickel Binding Sites List in 1jmx
Nickel binding site 1 out of 1 in the Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni2001

b:20.0
occ:1.00
OE1 A:GLU367 1.9 17.9 1.0
O A:HOH2068 2.1 13.9 1.0
O A:HOH2248 2.2 60.9 1.0
O A:HOH2151 2.6 22.3 1.0
CD A:GLU367 3.0 18.9 1.0
OE2 A:GLU367 3.4 21.0 1.0
O A:VAL368 4.1 16.9 1.0
O A:HOH2111 4.1 24.2 1.0
CG A:GLU367 4.3 17.8 1.0
N A:VAL368 4.4 16.6 1.0
O A:HOH2051 4.4 18.6 1.0
CB A:GLU367 4.6 17.5 1.0
O A:THR476 4.6 18.3 1.0
CA A:GLU367 4.7 18.6 1.0
C A:VAL368 5.0 16.1 1.0

Reference:

A.Satoh, J.K.Kim, I.Miyahara, B.Devreese, I.Vandenberghe, A.Hacisalihoglu, T.Okajima, S.Kuroda, O.Adachi, J.A.Duine, J.Van Beeumen, K.Tanizawa, K.Hirotsu. Crystal Structure of Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida. Identification of A Novel Quinone Cofactor Encaged By Multiple Thioether Cross-Bridges. J.Biol.Chem. V. 277 2830 2002.
ISSN: ISSN 0021-9258
PubMed: 11704672
DOI: 10.1074/JBC.M109090200
Page generated: Thu Oct 29 06:14:38 2020
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