Nickel in PDB 1jmz: Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida with Inhibitor

The structure of Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida with Inhibitor, PDB code: 1jmz was solved by A.Satoh, I.Miyahara, K.Hirotsu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	167.210, 92.370, 79.300, 90.00, 112.00, 90.00
R / Rfree (%)	21.5 / 25.1

The structure of Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida with Inhibitor also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Nickel atom in the Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida with Inhibitor (pdb code 1jmz). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida with Inhibitor, PDB code: 1jmz:

Nickel binding site 1 out of 1 in the Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida with Inhibitor


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of A Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida with Inhibitor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni2001 b:20.4 occ:1.00 OE1 A:GLU367 2.1 15.3 1.0 O A:HOH2061 2.5 19.7 1.0 CD A:GLU367 3.1 17.4 1.0 OE2 A:GLU367 3.3 19.1 1.0 O A:VAL368 4.2 15.7 1.0 O A:HOH2048 4.3 20.3 1.0 CG A:GLU367 4.4 16.1 1.0 N A:VAL368 4.5 16.1 1.0 O A:THR476 4.6 18.7 1.0 CB A:GLU367 4.8 16.8 1.0 CA A:GLU367 4.8 17.9 1.0

A.Satoh, J.K.Kim, I.Miyahara, B.Devreese, I.Vandenberghe, A.Hacisalihoglu, T.Okajima, S.Kuroda, O.Adachi, J.A.Duine, J.Van Beeumen, K.Tanizawa, K.Hirotsu. Crystal Structure of Quinohemoprotein Amine Dehydrogenase From Pseudomonas Putida. Identification of A Novel Quinone Cofactor Encaged By Multiple Thioether Cross-Bridges. J.Biol.Chem. V. 277 2830 2002.
ISSN: ISSN 0021-9258
PubMed: 11704672
DOI: 10.1074/JBC.M109090200