Nickel in PDB 1jvn: Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel Through A (Beta/Alpha)8 Barrel Joins Two Active Sites

The structure of Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel Through A (Beta/Alpha)8 Barrel Joins Two Active Sites, PDB code: 1jvn was solved by B.N.Chaudhuri, J.L.Smith, V.J.Davisson, R.S.Myers, S.C.Lange, S.V.Chittur, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	75.21 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	98.370, 112.173, 116.680, 90.00, 90.00, 90.00
R / Rfree (%)	22.4 / 24.2

The binding sites of Nickel atom in the Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel Through A (Beta/Alpha)8 Barrel Joins Two Active Sites (pdb code 1jvn). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel Through A (Beta/Alpha)8 Barrel Joins Two Active Sites, PDB code: 1jvn:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel Through A (Beta/Alpha)8 Barrel Joins Two Active Sites


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel Through A (Beta/Alpha)8 Barrel Joins Two Active Sites within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni902 b:26.6 occ:1.00 N A:SER-2 1.8 22.2 1.0 ND1 A:HIS-1 1.9 25.9 1.0 N A:HIS-1 2.0 24.1 1.0 N A:GLY-3 2.1 22.1 1.0 C A:GLY-3 2.7 23.4 1.0 C A:SER-2 2.8 23.3 1.0 CA A:SER-2 2.8 22.9 1.0 CA A:GLY-3 2.9 23.7 1.0 CE1 A:HIS-1 2.9 26.9 1.0 CG A:HIS-1 2.9 26.1 1.0 CA A:HIS-1 3.1 25.0 1.0 CB A:HIS-1 3.3 25.7 1.0 CD1 B:TYR425 3.6 29.5 1.0 N A:MET1 3.6 26.9 1.0 CE1 B:TYR425 3.6 28.6 1.0 C A:HIS-1 3.8 25.8 1.0 O A:GLY-3 3.9 23.7 1.0 OE1 A:GLU27 3.9 33.1 1.0 OG A:SER-2 3.9 26.2 1.0 CB A:SER-2 3.9 23.1 1.0 O A:SER-2 4.0 24.4 1.0 NE2 A:HIS-1 4.0 27.3 1.0 CD2 A:HIS-1 4.1 26.4 1.0 CG B:TYR425 4.2 28.9 1.0 CZ B:TYR425 4.2 29.7 1.0 O B:HOH1028 4.3 22.8 1.0 O A:MET1 4.5 26.1 1.0 CD2 B:TYR425 4.6 28.7 1.0 CE2 B:TYR425 4.7 29.2 1.0 CG A:MET1 4.7 29.6 1.0 OH B:TYR425 4.8 29.9 1.0 CA A:MET1 4.8 27.9 1.0 CD A:GLU27 4.9 31.8 1.0 CB B:TYR425 4.9 30.1 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel Through A (Beta/Alpha)8 Barrel Joins Two Active Sites


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel Through A (Beta/Alpha)8 Barrel Joins Two Active Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni901 b:27.8 occ:1.00 N B:SER-2 1.9 26.8 1.0 ND1 B:HIS-1 1.9 28.6 1.0 N B:GLY-3 2.1 26.4 1.0 N B:HIS-1 2.1 28.8 1.0 C B:GLY-3 2.7 27.9 1.0 CA B:GLY-3 2.9 27.5 1.0 CA B:SER-2 2.9 26.1 1.0 C B:SER-2 2.9 27.8 1.0 CG B:HIS-1 2.9 28.2 1.0 CE1 B:HIS-1 2.9 27.8 1.0 CA B:HIS-1 3.1 29.9 1.0 CB B:HIS-1 3.3 27.7 1.0 N B:MET1 3.5 32.8 1.0 C B:HIS-1 3.8 30.9 1.0 O B:GLY-3 3.9 28.7 1.0 CB B:SER-2 4.0 25.2 1.0 NE2 B:HIS-1 4.0 28.2 1.0 CD2 B:HIS-1 4.0 26.9 1.0 OG B:SER-2 4.1 27.1 1.0 O B:SER-2 4.1 28.3 1.0 O B:MET1 4.8 33.3 1.0 CA B:MET1 4.8 34.0 1.0

B.N.Chaudhuri, S.C.Lange, R.S.Myers, S.V.Chittur, V.J.Davisson, J.L.Smith. Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel Through A (Beta/Alpha)8 Barrel Joins Two Active Sites. Structure V. 9 987 2001.
ISSN: ISSN 0969-2126
PubMed: 11591353
DOI: 10.1016/S0969-2126(01)00661-X