Chemical elements
  Nickel
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    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
      1mro
      1mvh
      1mvx
      1nih
      1nm2
      1ns2
      1nzc
      1nzr
      1oao
      1oej
      1oid
      1oie
      1opm
      1ox4
      1ox5
      1ox6
      1p1m
      1p25
      1plf
      1q0d
      1q0f
      1q0g
      1q0k
      1q0m
      1q3i
      1q5y
      1q97
      1q99
      1qcn
      1qco
      1qfg
      1qjq
      1qkc
      1qwz
      1qxj
      1qxr
      1qy4
      1qy7
      1r0j
      1r2o
      1r6z
      1ru3
      1rxq
      1rze
      1s17
      1s3m
      1s3t
      1s3z
      1s6m
      1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
    PDB 3hdp-3kvb
    PDB 3l1m-3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in the structure of Structure of the Set Domain Histone Lysine Methyltransferase CLR4 (pdb 1mvx)






The binding sites of Nickel atom in the structure of Structure of the Set Domain Histone Lysine Methyltransferase CLR4 (pdb code 1mvx). This binding sites where shown with 5.0 Angstroms radius around Nickel atom.
The 1mvx structure was solved by J.R.MIN, X.ZHANG, X.D.CHENG, S.I.S.GREWAL, R.-M.XU, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)50.0-3.0
Space groupP6122
a (A)75.460
b (A)75.460
c (A)189.130
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)21.6
Rfree (%)28.6


Nickel Binding Sites:

Nickel binding site 1 out of 1 in 1mvx


Nickel binding site 1 out of 1 in 1mvx
Click to enlarge
stereopicture of Nickel binding site 1 out of 1 in 1mvx
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 1mvx. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg206, A: Arg210,

conact list:


AtomAtomDistance (A)
NiCD A:Arg2064.64
NiCZ A:Arg2064.80
NiNH1 A:Arg2063.66
NiCZ A:Arg2104.22
NiNH2 A:Arg2103.61
NiNH1 A:Arg2103.89

interactive model:




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