Chemical elements
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    PDB 2cqz-2jih
    PDB 2jk8-2v4b
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    PDB 3l1m-3o00
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    PDB 8icl-9ant

Nickel in the structure of "Malonyl-Coa:Acp Transacylase" (pdb 1nm2)

The binding sites of Nickel atom in the structure of "Malonyl-Coa:Acp Transacylase" (pdb code 1nm2). This binding sites where shown with 5.0 Angstroms radius around Nickel atom.
The 1nm2 structure was solved by A.T.KEATINGE-CLAY, A.A.SHELAT, D.F.SAVAGE, S.TSAI, L.J.W.MIERCKE, J.D.O'CONNELL III, C.KHOSLA, R.M.STROUD, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)48.8-2.0
Space groupP212121
a (A)43.067
b (A)54.486
c (A)109.880
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)19.7
Rfree (%)23.2

Nickel Binding Sites:

Nickel binding site 1 out of 1 in 1nm2

Nickel binding site 1 out of 1 in 1nm2
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stereopicture of Nickel binding site 1 out of 1 in 1nm2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 1nm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp49, A: Asp51, A: Glu52, A: Hoh531, A: Hoh532,

conact list:

AtomAtomDistance (A)
NiCB A:Asp494.18
NiOD2 A:Asp492.15
NiOD1 A:Asp492.66
NiCG A:Asp492.71
NiCB A:Asp514.40
NiOD2 A:Asp512.09
NiOD1 A:Asp513.30
NiCG A:Asp513.03
NiOE2 A:Glu524.12
NiCD A:Glu524.72
NiCG A:Glu524.42
NiO A:Hoh5311.76
NiO A:Hoh5323.94

interactive model:

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