Nickel in PDB 1oej: Yoda From Escherichia Coli Crystallised with No Added Ions

The structure of Yoda From Escherichia Coli Crystallised with No Added Ions, PDB code: 1oej was solved by G.David, K.Blondeau, M.Renouard, S.Penel, A.Lewit-Bentley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.76 / 1.81
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.348, 64.558, 41.499, 90.00, 117.83, 90.00
R / Rfree (%)	18 / 25.226

The binding sites of Nickel atom in the Yoda From Escherichia Coli Crystallised with No Added Ions (pdb code 1oej). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Yoda From Escherichia Coli Crystallised with No Added Ions, PDB code: 1oej:

Nickel binding site 1 out of 1 in the Yoda From Escherichia Coli Crystallised with No Added Ions


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Yoda From Escherichia Coli Crystallised with No Added Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni1194 b:31.5 occ:1.00 NE2 A:HIS155 2.2 25.9 1.0 NE2 A:HIS144 2.3 27.0 1.0 NE2 A:HIS153 2.3 26.9 1.0 O A:HOH2091 2.5 27.4 1.0 CE1 A:HIS155 3.0 24.8 1.0 CE1 A:HIS144 3.1 26.1 1.0 CD2 A:HIS153 3.2 24.9 1.0 CD2 A:HIS155 3.2 24.4 1.0 CE1 A:HIS153 3.3 26.5 1.0 CD2 A:HIS144 3.3 25.3 1.0 ND1 A:HIS155 4.2 24.3 1.0 ND1 A:HIS144 4.3 23.7 1.0 CG A:HIS155 4.3 22.0 1.0 CG A:HIS153 4.4 26.2 1.0 ND1 A:HIS153 4.4 27.5 1.0 CG A:HIS144 4.4 21.3 1.0

G.David, K.Blondeau, M.Schiltz, S.Penel, A.Lewit-Bentley. Yoda From Escherichia Coli Is A Metal-Binding, Lipocalin-Like Protein J.Biol.Chem. V. 278 43728 2003.
ISSN: ISSN 0021-9258
PubMed: 12909634
DOI: 10.1074/JBC.M304484200