Nickel in the structure of Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Substrate (pdb 1opm)

The binding sites of Nickel atom in the structure of Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Substrate (pdb code 1opm). This binding sites where shown with 5.0 Angstroms radius around Nickel atom. The 1opm structure was solved by S.T.PRIGGE, L.M.AMZEL, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 10.0-2.1 Space group P212121 a (A) 69.399 b (A) 68.840 c (A) 81.047 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 20 Rfree (%) 25.9 Nickel Binding Sites: Nickel binding site 1 out of 1 in 1opm Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 1opm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His235, A: Asp282, A: Azi361, A: Gol362, A: Hoh370, A: Hoh424, A: Hoh804, conact list: Atom Atom Distance (A) Ni NE2 A:His235 2.19 Ni ND1 A:His235 4.33 Ni CD2 A:His235 2.94 Ni CE1 A:His235 3.32 Ni CG A:His235 4.18 Ni CB A:Asp282 4.20 Ni OD1 A:Asp282 4.19 Ni CG A:Asp282 4.49 Ni N1 A:Azi361 1.95 Ni N3 A:Azi361 3.96 Ni N2 A:Azi361 2.85 Ni O2 A:Gol362 2.15 Ni C1 A:Gol362 2.86 Ni O1 A:Gol362 2.04 Ni C3 A:Gol362 4.30 Ni O3 A:Gol362 4.98 Ni C2 A:Gol362 2.90 Ni O A:Hoh370 4.34 Ni O A:Hoh424 4.42 Ni O A:Hoh804 1.97 interactive model: