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Nickel in PDB 1p1m: Structure of Thermotoga Maritima Amidohydrolase TM0936 Bound to Ni and Methionine

Protein crystallography data

The structure of Structure of Thermotoga Maritima Amidohydrolase TM0936 Bound to Ni and Methionine, PDB code: 1p1m was solved by R.Kniewel, J.A.Buglino, C.D.Lima, S.K.Burley, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.64 / 1.50
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.373, 113.373, 79.884, 90.00, 90.00, 120.00
R / Rfree (%) 20.1 / 21.3

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of Thermotoga Maritima Amidohydrolase TM0936 Bound to Ni and Methionine (pdb code 1p1m). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of Thermotoga Maritima Amidohydrolase TM0936 Bound to Ni and Methionine, PDB code: 1p1m:

Nickel binding site 1 out of 1 in 1p1m

Go back to Nickel Binding Sites List in 1p1m
Nickel binding site 1 out of 1 in the Structure of Thermotoga Maritima Amidohydrolase TM0936 Bound to Ni and Methionine


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Thermotoga Maritima Amidohydrolase TM0936 Bound to Ni and Methionine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni9001

b:14.1
occ:1.00
O A:HOH9072 2.1 14.6 1.0
OD1 A:ASP279 2.1 12.2 1.0
NE2 A:HIS57 2.1 13.0 1.0
NE2 A:HIS55 2.2 12.2 1.0
NE2 A:HIS200 2.2 12.9 1.0
O A:HOH9075 2.3 21.3 1.0
CE1 A:HIS55 3.0 12.5 1.0
CE1 A:HIS57 3.1 13.0 1.0
CD2 A:HIS200 3.1 13.1 1.0
CG A:ASP279 3.1 12.5 1.0
CD2 A:HIS57 3.1 12.9 1.0
CE1 A:HIS200 3.2 13.0 1.0
CD2 A:HIS55 3.3 12.4 1.0
OD2 A:ASP279 3.5 12.5 1.0
O A:HOH9051 4.0 22.2 1.0
NE2 A:HIS228 4.2 13.7 1.0
ND1 A:HIS55 4.2 12.4 1.0
ND1 A:HIS57 4.2 12.9 1.0
O A:HOH9437 4.2 69.0 1.0
CG A:HIS57 4.3 12.7 1.0
CG A:HIS200 4.3 12.7 1.0
ND1 A:HIS200 4.3 12.9 1.0
CG A:HIS55 4.3 12.3 1.0
O A:HOH9038 4.4 25.7 1.0
O A:HOH9137 4.4 33.2 1.0
CB A:ASP279 4.5 12.3 1.0
O A:HOH9003 4.5 15.2 1.0
CA A:ASP279 4.7 12.2 1.0
CE1 A:HIS228 4.9 13.2 1.0
O A:HOH9081 4.9 22.0 1.0

Reference:

R.Kniewel, J.A.Buglino, C.D.Lima. Structure of the Hypothetical Protein TM0936 From Thermotoga Maritima at 1.5A Bound to Ni and Methionine To Be Published 2003.
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