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Nickel in PDB 1plf: The Three-Dimensional Structure of Bovine Platelet Factor 4 at 3.0 Angstroms Resolution

Protein crystallography data

The structure of The Three-Dimensional Structure of Bovine Platelet Factor 4 at 3.0 Angstroms Resolution, PDB code: 1plf was solved by R.St Charles, B.F.P.Edwards, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.700, 68.000, 80.300, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Nickel Binding Sites:

The binding sites of Nickel atom in the The Three-Dimensional Structure of Bovine Platelet Factor 4 at 3.0 Angstroms Resolution (pdb code 1plf). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The Three-Dimensional Structure of Bovine Platelet Factor 4 at 3.0 Angstroms Resolution, PDB code: 1plf:

Nickel binding site 1 out of 1 in 1plf

Go back to Nickel Binding Sites List in 1plf
Nickel binding site 1 out of 1 in the The Three-Dimensional Structure of Bovine Platelet Factor 4 at 3.0 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Three-Dimensional Structure of Bovine Platelet Factor 4 at 3.0 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ni1

b:34.7
occ:1.00
NI D:TCN1 0.0 34.7 1.0
C2 D:TCN1 1.9 33.5 1.0
C3 D:TCN1 1.9 35.1 1.0
C1 D:TCN1 1.9 34.0 1.0
C4 D:TCN1 1.9 33.8 1.0
N2 D:TCN1 3.0 33.1 1.0
N1 D:TCN1 3.0 33.4 1.0
N3 D:TCN1 3.0 36.4 1.0
N4 D:TCN1 3.0 32.8 1.0
NE2 B:GLN24 3.5 21.9 1.0
CD2 D:LEU28 4.4 32.0 1.0
CD B:GLN24 4.7 24.2 1.0
CB D:CYS25 5.0 19.8 1.0

Reference:

R.St Charles, D.A.Walz, B.F.Edwards. The Three-Dimensional Structure of Bovine Platelet Factor 4 at 3.0-A Resolution. J.Biol.Chem. V. 264 2092 1989.
ISSN: ISSN 0021-9258
PubMed: 2914894
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