Atomistry » Nickel » PDB 2gw4-2pos » 3bkh
Atomistry »
  Nickel »
    PDB 2gw4-2pos »
      3bkh »

Nickel in PDB 3bkh: Crystal Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144

Protein crystallography data

The structure of Crystal Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, PDB code: 3bkh was solved by A.Fokine, K.A.Miroshnikov, M.M.Shneider, V.V.Mesyanzhinov, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.98 / 2.50
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 63.167, 63.167, 182.019, 90.00, 90.00, 120.00
R / Rfree (%) 20.7 / 25.1

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144 (pdb code 3bkh). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, PDB code: 3bkh:

Nickel binding site 1 out of 1 in 3bkh

Go back to Nickel Binding Sites List in 3bkh
Nickel binding site 1 out of 1 in the Crystal Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni501

b:61.6
occ:1.00
CA A:GLY58 3.6 34.4 1.0
O A:HOH519 3.7 43.1 1.0
N A:GLY58 3.7 40.0 1.0
C A:GLY58 3.7 31.1 1.0
N A:ASN60 3.8 35.0 1.0
CB A:ASN60 3.9 36.3 1.0
OG1 A:THR61 3.9 41.5 1.0
N A:THR61 4.0 39.4 1.0
O A:HOH529 4.0 52.1 1.0
ND2 A:ASN60 4.0 35.9 1.0
N A:LYS59 4.1 30.8 1.0
O A:GLY58 4.2 35.0 1.0
CA A:ASN60 4.3 37.4 1.0
CG A:ASN60 4.5 35.8 1.0
O A:ILE56 4.5 45.6 1.0
C A:ASN60 4.6 37.9 1.0
CB A:THR61 4.7 42.6 1.0
C A:LYS59 4.7 35.8 1.0
CA A:LYS59 4.9 32.1 1.0
C A:VAL57 5.0 42.6 1.0
CA A:THR61 5.0 39.6 1.0

Reference:

A.Fokine, K.A.Miroshnikov, M.M.Shneider, V.V.Mesyanzhinov, M.G.Rossmann. Structure of the Bacteriophage Phi Kz Lytic Transglycosylase GP144. J.Biol.Chem. V. 283 7242 2008.
ISSN: ISSN 0021-9258
PubMed: 18160394
DOI: 10.1074/JBC.M709398200
Page generated: Fri Sep 25 08:20:01 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy