Nickel in PDB, part 11 (files: 401-440),
PDB 3a1f-3ds9
Experimental structures of coordination spheres of Nickel (Ni) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Nickel atoms. PDB files: 401-440 (PDB 3a1f-3ds9).
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3a1f (Ni: 7) - The Crystal Structure of Nadph Binding Domain of GP91(Phox)
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3a3v (Ni: 1) - Crystal Structure of Reducing-End-Xylose Releasing Exo- Oligoxylanase Y198F Mutant
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3al6 (Ni: 4) - Crystal Structure of Human TYW5
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3avr (Ni: 1) - Catalytic Fragment of Utx/KDM6A Bound with Histone H3K27ME3 Peptide, N-Oxyalylglycine, and Ni(II)
Other atoms:
Zn (1);
Cl (2);
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3avs (Ni: 3) - Catalytic Fragment of Utx/KDM6A Bound with N-Oxyalylglycine, and Ni(II)
Other atoms:
Cl (1);
Zn (1);
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3ayx (Ni: 2) - Membrane-Bound Respiratory [Nife] Hydrogenase From Hydrogenovibrio Marinus in An H2-Reduced Condition
Other atoms:
Mg (2);
Fe (24);
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3ayz (Ni: 2) - Membrane-Bound Respiratory [Nife] Hydrogenase From Hydrogenovibrio Marinus in An Air-Oxidized Condition
Other atoms:
Mg (2);
Fe (32);
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3b2y (Ni: 2) - Crystal Structure of A Putative Metallopeptidase (SDEN_2526) From Shewanella Denitrificans OS217 at 1.74 A Resolution
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3b51 (Ni: 1) - Ni,Fe-Codh-600 Mv State
Other atoms:
Fe (11);
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3b52 (Ni: 1) - Ni,Fe-Codh-600 Mv State + CO2
Other atoms:
Fe (11);
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3b53 (Ni: 1) - Ni,Fe-Codh-320 Mv State
Other atoms:
Fe (11);
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3bem (Ni: 1) - Crystal Structure of Putative Nitroreductase Ydfn (2632848) From Bacillus Subtilis at 1.65 A Resolution
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3bix (Ni: 2) - Crystal Structure of the Extracellular Esterase Domain of Neuroligin-1
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3bj4 (Ni: 1) - The KCNQ1 (KV7.1) C-Terminus, A Multi-Tiered Scaffold For Subunit Assembly and Protein Interaction
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3bjd (Ni: 3) - Crystal Structure of Putative 3-Oxoacyl-(Acyl-Carrier- Protein) Synthase From Pseudomonas Aeruginosa
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3bkh (Ni: 1) - Crystal Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144
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3bkv (Ni: 1) - X-Ray Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, in Complex with Chitotetraose, (Nag)4
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3bq8 (Ni: 2) - Crystal Structure of the E.Coli Phoq Sensor Domain
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3bvc (Ni: 2) - Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism
Other atoms:
Ca (4);
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3c2q (Ni: 1) - Crystal Structure of Conserved Putative Lor/Sdh Protein From Methanococcus Maripaludis S2
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3c6c (Ni: 1) - Crystal Structure of 3-Keto-5-Aminohexanoate Cleavage Enzyme (YP_293392.1) From Ralstonia Eutropha JMP134 at 1.72 A Resolution
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3c7j (Ni: 2) - Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000
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3cc8 (Ni: 3) - Crystal Structure of Putative Methyltransferase From Ndp-N- Methyl-L-Glucosamine Biosynthetic Pathway (NP_977653.1) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution
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3cf4 (Ni: 1) - Structure of the Codh Component of the M. Barkeri Acds Complex
Other atoms:
Fe (18);
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3cgm (Ni: 1) - Crystal Structure of Thermophilic Slyd
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3cj2 (Ni: 2) - Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Optimized Small Molecule Fragments
Other atoms:
Br (2);
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3cj3 (Ni: 2) - Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Optimized Small Molecule Fragments
Other atoms:
Br (2);
Cl (2);
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3cj4 (Ni: 2) - Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Optimized Small Molecule Fragments
Other atoms:
Br (2);
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3csx (Ni: 1) - Structural Characterization of A Protein in the DUF683 Family- Crystal Structure of CCE_0567 From the Cyanobacterium Cyanothece 51142.
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3cu2 (Ni: 2) - Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution
Other atoms:
Ca (2);
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3cur (Ni: 3) - Structure of A Double Methionine Mutant of Ni-Fe Hydrogenase
Other atoms:
Mg (3);
Fe (36);
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3cus (Ni: 3) - Structure of A Double Ile/Phe Mutant of Ni-Fe Hydrogenase Refined at 2.2 Angstrom Resolution
Other atoms:
Mg (3);
Fe (36);
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3d34 (Ni: 6) - Structure of the F-Spondin Domain of Mindin
Other atoms:
Ca (2);
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3d82 (Ni: 5) - Crystal Structure of Domain of Unknown Function with A Cupin Fold (YP_752209.1) From Shewanella Frigidimarina Ncimb 400 at 2.05 A Resolution
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3d9b (Ni: 1) - Symmetric Structure of E. Coli Acrb
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3de9 (Ni: 3) - Crystal Structure of A Trimeric Cytochrome CB562 Assembly Induced By Nickel Coordination
Other atoms:
Fe (1);
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3di5 (Ni: 1) - Crystal Structure of A Dinb-Like Protein (NP_980948.1) From Bacillus Cereus Atcc 10987 at 2.01 A Resolution
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3dkq (Ni: 3) - Crystal Structure of Putative Oxygenase (YP_001051978.1) From Shewanella Baltica OS155 at 2.26 A Resolution
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3dp8 (Ni: 3) - Structural Characterization of A Putative Endogenous Metal Chelator in the Periplasmic Nickel Transporter Nika (Nickel Butane-1,2,4-Tricarboxylate Form)
Other atoms:
Cl (7);
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3ds9 (Ni: 1) - A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate
Other atoms:
Zn (1);
Page generated: Sun Dec 15 11:45:13 2024
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