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Nickel in PDB, part 11 (files: 401-440), PDB 3a1f-3ds9

Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms. PDB files: 401-440 (PDB 3a1f-3ds9).
  1. 3a1f (Ni: 7) - The Crystal Structure of Nadph Binding Domain of GP91(Phox)
  2. 3a3v (Ni: 1) - Crystal Structure of Reducing-End-Xylose Releasing Exo- Oligoxylanase Y198F Mutant
  3. 3al6 (Ni: 4) - Crystal Structure of Human TYW5
  4. 3avr (Ni: 1) - Catalytic Fragment of Utx/KDM6A Bound with Histone H3K27ME3 Peptide, N-Oxyalylglycine, and Ni(II)
    Other atoms: Zn (1); Cl (2);
  5. 3avs (Ni: 3) - Catalytic Fragment of Utx/KDM6A Bound with N-Oxyalylglycine, and Ni(II)
    Other atoms: Cl (1); Zn (1);
  6. 3ayx (Ni: 2) - Membrane-Bound Respiratory [Nife] Hydrogenase From Hydrogenovibrio Marinus in An H2-Reduced Condition
    Other atoms: Mg (2); Fe (24);
  7. 3ayz (Ni: 2) - Membrane-Bound Respiratory [Nife] Hydrogenase From Hydrogenovibrio Marinus in An Air-Oxidized Condition
    Other atoms: Mg (2); Fe (32);
  8. 3b2y (Ni: 2) - Crystal Structure of A Putative Metallopeptidase (SDEN_2526) From Shewanella Denitrificans OS217 at 1.74 A Resolution
  9. 3b51 (Ni: 1) - Ni,Fe-Codh-600 Mv State
    Other atoms: Fe (11);
  10. 3b52 (Ni: 1) - Ni,Fe-Codh-600 Mv State + CO2
    Other atoms: Fe (11);
  11. 3b53 (Ni: 1) - Ni,Fe-Codh-320 Mv State
    Other atoms: Fe (11);
  12. 3bem (Ni: 1) - Crystal Structure of Putative Nitroreductase Ydfn (2632848) From Bacillus Subtilis at 1.65 A Resolution
  13. 3bix (Ni: 2) - Crystal Structure of the Extracellular Esterase Domain of Neuroligin-1
  14. 3bj4 (Ni: 1) - The KCNQ1 (KV7.1) C-Terminus, A Multi-Tiered Scaffold For Subunit Assembly and Protein Interaction
  15. 3bjd (Ni: 3) - Crystal Structure of Putative 3-Oxoacyl-(Acyl-Carrier- Protein) Synthase From Pseudomonas Aeruginosa
  16. 3bkh (Ni: 1) - Crystal Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144
  17. 3bkv (Ni: 1) - X-Ray Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, in Complex with Chitotetraose, (Nag)4
  18. 3bq8 (Ni: 2) - Crystal Structure of the E.Coli Phoq Sensor Domain
  19. 3bvc (Ni: 2) - Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism
    Other atoms: Ca (4);
  20. 3c2q (Ni: 1) - Crystal Structure of Conserved Putative Lor/Sdh Protein From Methanococcus Maripaludis S2
  21. 3c6c (Ni: 1) - Crystal Structure of 3-Keto-5-Aminohexanoate Cleavage Enzyme (YP_293392.1) From Ralstonia Eutropha JMP134 at 1.72 A Resolution
  22. 3c7j (Ni: 2) - Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000
  23. 3cc8 (Ni: 3) - Crystal Structure of Putative Methyltransferase From Ndp-N- Methyl-L-Glucosamine Biosynthetic Pathway (NP_977653.1) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution
  24. 3cf4 (Ni: 1) - Structure of the Codh Component of the M. Barkeri Acds Complex
    Other atoms: Fe (18);
  25. 3cgm (Ni: 1) - Crystal Structure of Thermophilic Slyd
  26. 3cj2 (Ni: 2) - Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Optimized Small Molecule Fragments
    Other atoms: Br (2);
  27. 3cj3 (Ni: 2) - Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Optimized Small Molecule Fragments
    Other atoms: Br (2); Cl (2);
  28. 3cj4 (Ni: 2) - Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Optimized Small Molecule Fragments
    Other atoms: Br (2);
  29. 3csx (Ni: 1) - Structural Characterization of A Protein in the DUF683 Family- Crystal Structure of CCE_0567 From the Cyanobacterium Cyanothece 51142.
  30. 3cu2 (Ni: 2) - Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution
    Other atoms: Ca (2);
  31. 3cur (Ni: 3) - Structure of A Double Methionine Mutant of Ni-Fe Hydrogenase
    Other atoms: Mg (3); Fe (36);
  32. 3cus (Ni: 3) - Structure of A Double Ile/Phe Mutant of Ni-Fe Hydrogenase Refined at 2.2 Angstrom Resolution
    Other atoms: Mg (3); Fe (36);
  33. 3d34 (Ni: 6) - Structure of the F-Spondin Domain of Mindin
    Other atoms: Ca (2);
  34. 3d82 (Ni: 5) - Crystal Structure of Domain of Unknown Function with A Cupin Fold (YP_752209.1) From Shewanella Frigidimarina Ncimb 400 at 2.05 A Resolution
  35. 3d9b (Ni: 1) - Symmetric Structure of E. Coli Acrb
  36. 3de9 (Ni: 3) - Crystal Structure of A Trimeric Cytochrome CB562 Assembly Induced By Nickel Coordination
    Other atoms: Fe (1);
  37. 3di5 (Ni: 1) - Crystal Structure of A Dinb-Like Protein (NP_980948.1) From Bacillus Cereus Atcc 10987 at 2.01 A Resolution
  38. 3dkq (Ni: 3) - Crystal Structure of Putative Oxygenase (YP_001051978.1) From Shewanella Baltica OS155 at 2.26 A Resolution
  39. 3dp8 (Ni: 3) - Structural Characterization of A Putative Endogenous Metal Chelator in the Periplasmic Nickel Transporter Nika (Nickel Butane-1,2,4-Tricarboxylate Form)
    Other atoms: Cl (7);
  40. 3ds9 (Ni: 1) - A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate
    Other atoms: Zn (1);
Page generated: Sat Apr 3 17:57:42 2021

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