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Nickel in PDB 3c7j: Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000

Protein crystallography data

The structure of Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000, PDB code: 3c7j was solved by B.Nocek, A.Sather, M.Gu, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 55.954, 132.768, 170.461, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 22.7

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000 (pdb code 3c7j). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000, PDB code: 3c7j:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3c7j

Go back to Nickel Binding Sites List in 3c7j
Nickel binding site 1 out of 2 in the Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni301

b:43.4
occ:0.80
NE2 A:HIS214 2.2 34.9 1.0
NE2 A:HIS148 2.2 34.3 1.0
OD1 A:ASN144 2.3 27.3 1.0
O A:HOH457 2.3 44.2 1.0
NE2 A:HIS192 2.3 32.2 1.0
O A:HOH456 2.4 38.5 1.0
CE1 A:HIS214 3.0 33.6 1.0
CE1 A:HIS148 3.1 31.6 1.0
CG A:ASN144 3.2 28.8 1.0
CD2 A:HIS192 3.2 31.0 1.0
CD2 A:HIS214 3.3 31.7 1.0
CE1 A:HIS192 3.3 30.2 1.0
CD2 A:HIS148 3.3 31.2 1.0
ND2 A:ASN144 3.5 29.3 1.0
O A:HOH385 4.0 45.0 1.0
ND1 A:HIS214 4.2 31.5 1.0
ND1 A:HIS148 4.3 31.1 1.0
CG A:HIS214 4.4 28.9 1.0
ND1 A:HIS192 4.4 32.2 1.0
CG A:HIS192 4.4 28.7 1.0
CG A:HIS148 4.4 27.5 1.0
CB A:ASN144 4.6 26.6 1.0

Nickel binding site 2 out of 2 in 3c7j

Go back to Nickel Binding Sites List in 3c7j
Nickel binding site 2 out of 2 in the Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni301

b:46.9
occ:1.00
OD1 B:ASN144 2.1 33.8 1.0
NE2 B:HIS214 2.2 34.0 1.0
NE2 B:HIS148 2.2 34.5 1.0
NE2 B:HIS192 2.2 32.0 1.0
O B:HOH312 2.7 55.5 1.0
CE1 B:HIS214 3.0 32.8 1.0
CE1 B:HIS192 3.1 27.0 1.0
CG B:ASN144 3.2 30.0 1.0
CE1 B:HIS148 3.2 32.4 1.0
CD2 B:HIS148 3.3 32.5 1.0
CD2 B:HIS214 3.3 32.3 1.0
CD2 B:HIS192 3.3 31.5 1.0
ND2 B:ASN144 3.5 31.0 1.0
ND1 B:HIS214 4.2 31.8 1.0
ND1 B:HIS192 4.3 30.4 1.0
ND1 B:HIS148 4.3 32.4 1.0
CG B:HIS214 4.4 29.4 1.0
CG B:HIS148 4.4 30.5 1.0
CG B:HIS192 4.4 29.4 1.0
CB B:ASN144 4.6 28.4 1.0
O B:HOH434 4.7 47.3 1.0
O B:HOH358 4.8 56.0 1.0

Reference:

B.Nocek, A.Sather, M.Gu, A.Joachimiak. Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000. To Be Published.
Page generated: Fri Sep 25 08:20:15 2020
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