Nickel in PDB 3bkv: X-Ray Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, in Complex with Chitotetraose, (Nag)4

The structure of X-Ray Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, in Complex with Chitotetraose, (Nag)4, PDB code: 3bkv was solved by A.Fokine, K.A.Miroshnikov, M.M.Shneider, V.V.Mesyanzhinov, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.39 / 2.60
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	62.322, 62.322, 182.643, 90.00, 90.00, 120.00
R / Rfree (%)	22.7 / 27.2

The binding sites of Nickel atom in the X-Ray Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, in Complex with Chitotetraose, (Nag)4 (pdb code 3bkv). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the X-Ray Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, in Complex with Chitotetraose, (Nag)4, PDB code: 3bkv:

Nickel binding site 1 out of 1 in the X-Ray Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, in Complex with Chitotetraose, (Nag)4


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of X-Ray Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, in Complex with Chitotetraose, (Nag)4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni601 b:48.5 occ:1.00 N A:GLY58 3.5 33.4 1.0 CA A:GLY58 3.6 30.5 1.0 OG1 A:THR61 3.6 36.2 1.0 C A:GLY58 3.7 33.5 1.0 N A:ASN60 3.8 36.7 1.0 CB A:ASN60 3.9 36.1 1.0 N A:THR61 4.0 34.5 1.0 N A:LYS59 4.1 32.5 1.0 O A:GLY58 4.2 30.4 1.0 CA A:ASN60 4.3 35.9 1.0 ND2 A:ASN60 4.3 36.9 1.0 O A:ILE56 4.3 38.4 1.0 CB A:THR61 4.6 34.0 1.0 C A:ASN60 4.6 33.0 1.0 CG A:ASN60 4.6 39.5 1.0 C A:LYS59 4.7 37.1 1.0 C A:VAL57 4.8 35.7 1.0 CA A:THR61 4.9 33.9 1.0 CA A:LYS59 4.9 35.2 1.0

A.Fokine, K.A.Miroshnikov, M.M.Shneider, V.V.Mesyanzhinov, M.G.Rossmann. Structure of the Bacteriophage Phi Kz Lytic Transglycosylase GP144. J.Biol.Chem. V. 283 7242 2008.
ISSN: ISSN 0021-9258
PubMed: 18160394
DOI: 10.1074/JBC.M709398200