Nickel in PDB 3bvc: Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism

The structure of Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism, PDB code: 3bvc was solved by Y.Patskovsky, R.Toro, A.J.Meyer, M.Rutter, M.Iizuka, M.Maletic, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.75
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	96.405, 101.973, 76.506, 90.00, 90.00, 90.00
R / Rfree (%)	25.5 / 29.8

The structure of Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Nickel atom in the Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism (pdb code 3bvc). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism, PDB code: 3bvc:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni304 b:98.6 occ:1.00 NE2 A:HIS187 2.4 74.1 1.0 NE2 A:HIS121 2.4 77.0 1.0 NE2 A:HIS119 2.5 0.4 1.0 CE1 A:HIS121 3.1 82.7 1.0 CE1 A:HIS187 3.3 70.7 1.0 CD2 A:HIS187 3.4 67.6 1.0 CE1 A:HIS119 3.4 0.7 1.0 CD2 A:HIS119 3.5 83.5 1.0 CD2 A:HIS121 3.6 79.9 1.0 ND1 A:HIS121 4.3 83.0 1.0 ND1 A:HIS187 4.4 74.0 1.0 ND1 A:HIS119 4.5 96.4 1.0 CG A:HIS187 4.5 58.8 1.0 CG A:HIS119 4.6 82.7 1.0 CG A:HIS121 4.6 76.5 1.0 CZ2 A:TRP181 4.7 84.4 1.0 CZ2 A:TRP106 4.7 74.2 1.0 OG A:SER202 4.8 74.3 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni305 b:0.1 occ:1.00 NE2 B:HIS187 2.3 70.2 1.0 NE2 B:HIS121 2.4 78.3 1.0 NE2 B:HIS119 2.4 0.0 1.0 CE1 B:HIS187 3.1 70.1 1.0 CE1 B:HIS121 3.1 84.0 1.0 CE1 B:HIS119 3.2 0.5 1.0 CD2 B:HIS119 3.4 82.8 1.0 CD2 B:HIS187 3.5 64.6 1.0 CD2 B:HIS121 3.5 76.6 1.0 ND1 B:HIS187 4.3 73.6 1.0 ND1 B:HIS119 4.3 96.9 1.0 ND1 B:HIS121 4.3 81.7 1.0 CG B:HIS119 4.4 81.1 1.0 CG B:HIS187 4.5 60.8 1.0 CG B:HIS121 4.6 74.9 1.0 CZ2 B:TRP106 4.8 75.7 1.0 CZ2 B:TRP181 4.9 84.0 1.0

Y.Patskovsky, R.Toro, A.J.Meyer, M.Rutter, M.Iizuka, M.Maletic, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of An Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens. To Be Published.