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Nickel in PDB 3bvc: Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism

Protein crystallography data

The structure of Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism, PDB code: 3bvc was solved by Y.Patskovsky, R.Toro, A.J.Meyer, M.Rutter, M.Iizuka, M.Maletic, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.75
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 96.405, 101.973, 76.506, 90.00, 90.00, 90.00
R / Rfree (%) 25.5 / 29.8

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism (pdb code 3bvc). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism, PDB code: 3bvc:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3bvc

Go back to Nickel Binding Sites List in 3bvc
Nickel binding site 1 out of 2 in the Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni304

b:98.6
occ:1.00
NE2 A:HIS187 2.4 74.1 1.0
NE2 A:HIS121 2.4 77.0 1.0
NE2 A:HIS119 2.5 0.4 1.0
CE1 A:HIS121 3.1 82.7 1.0
CE1 A:HIS187 3.3 70.7 1.0
CD2 A:HIS187 3.4 67.6 1.0
CE1 A:HIS119 3.4 0.7 1.0
CD2 A:HIS119 3.5 83.5 1.0
CD2 A:HIS121 3.6 79.9 1.0
ND1 A:HIS121 4.3 83.0 1.0
ND1 A:HIS187 4.4 74.0 1.0
ND1 A:HIS119 4.5 96.4 1.0
CG A:HIS187 4.5 58.8 1.0
CG A:HIS119 4.6 82.7 1.0
CG A:HIS121 4.6 76.5 1.0
CZ2 A:TRP181 4.7 84.4 1.0
CZ2 A:TRP106 4.7 74.2 1.0
OG A:SER202 4.8 74.3 1.0

Nickel binding site 2 out of 2 in 3bvc

Go back to Nickel Binding Sites List in 3bvc
Nickel binding site 2 out of 2 in the Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni305

b:0.1
occ:1.00
NE2 B:HIS187 2.3 70.2 1.0
NE2 B:HIS121 2.4 78.3 1.0
NE2 B:HIS119 2.4 0.0 1.0
CE1 B:HIS187 3.1 70.1 1.0
CE1 B:HIS121 3.1 84.0 1.0
CE1 B:HIS119 3.2 0.5 1.0
CD2 B:HIS119 3.4 82.8 1.0
CD2 B:HIS187 3.5 64.6 1.0
CD2 B:HIS121 3.5 76.6 1.0
ND1 B:HIS187 4.3 73.6 1.0
ND1 B:HIS119 4.3 96.9 1.0
ND1 B:HIS121 4.3 81.7 1.0
CG B:HIS119 4.4 81.1 1.0
CG B:HIS187 4.5 60.8 1.0
CG B:HIS121 4.6 74.9 1.0
CZ2 B:TRP106 4.8 75.7 1.0
CZ2 B:TRP181 4.9 84.0 1.0

Reference:

Y.Patskovsky, R.Toro, A.J.Meyer, M.Rutter, M.Iizuka, M.Maletic, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of An Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens. To Be Published.
Page generated: Fri Sep 25 08:20:09 2020
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