Atomistry » Nickel » PDB 3a1f-3ds9 » 3ds9
Atomistry »
  Nickel »
    PDB 3a1f-3ds9 »
      3ds9 »

Nickel in PDB 3ds9: A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate

Enzymatic activity of A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate

All present enzymatic activity of A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate:
3.4.24.69;

Protein crystallography data

The structure of A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate, PDB code: 3ds9 was solved by J.E.Zuniga, T.Fenn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.01 / 1.76
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 58.799, 189.205, 42.303, 90.00, 90.00, 90.00
R / Rfree (%) 21.3 / 24.8

Other elements in 3ds9:

The structure of A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate (pdb code 3ds9). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate, PDB code: 3ds9:

Nickel binding site 1 out of 1 in 3ds9

Go back to Nickel Binding Sites List in 3ds9
Nickel binding site 1 out of 1 in the A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni601

b:24.2
occ:1.00
 NE2 A:HIS269 2.1 12.4 1.0
NZ A:LYS272 2.2 11.8 1.0
O A:HOH814 2.2 16.6 1.0
O A:HOH816 2.3 20.3 1.0
O A:HOH815 2.3 25.3 1.0
CD2 A:HIS269 3.1 18.8 1.0
CE1 A:HIS269 3.1 18.1 1.0
CE A:LYS272 3.2 21.2 1.0
O A:HOH714 4.0 24.9 1.0
O A:HOH817 4.1 30.1 1.0
ND1 A:HIS269 4.2 15.7 1.0
CG A:HIS269 4.3 17.5 1.0
CD A:LYS272 4.5 16.5 1.0
CZ A:PHE273 4.9 14.3 1.0

Reference:

J.E.Zuniga, J.J.Schmidt, T.Fenn, J.C.Burnett, D.Arac, R.Gussio, R.G.Stafford, S.S.Badie, S.Bavari, A.T.Brunger. A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate Structure V. 16 1588 2008.
ISSN: ISSN 0969-2126
PubMed: 18940613
DOI: 10.1016/J.STR.2008.07.011
Page generated: Wed Oct 9 17:15:28 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy