Nickel in PDB 3cc8: Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution

The structure of Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution, PDB code: 3cc8 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.19 / 1.64
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	91.223, 54.399, 52.751, 90.00, 109.50, 90.00
R / Rfree (%)	16.5 / 20

The binding sites of Nickel atom in the Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution (pdb code 3cc8). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 3 binding sites of Nickel where determined in the Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution, PDB code: 3cc8:
Jump to Nickel binding site number: 1; 2; 3;

Nickel binding site 1 out of 3 in the Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni230 b:64.3 occ:1.00 NE2 A:HIS188 2.3 33.5 1.0 O A:HOH366 2.7 61.9 1.0 OE2 A:GLU192 2.7 37.7 0.5 O A:HOH398 2.9 54.3 1.0 O A:HOH367 2.9 46.6 1.0 OE1 A:GLU192 3.1 35.0 0.5 CD2 A:HIS188 3.2 33.0 1.0 CD A:GLU192 3.3 35.1 0.5 CE1 A:HIS188 3.4 33.5 1.0 OE2 A:GLU192 4.0 38.7 0.5 CG A:GLU192 4.3 31.3 0.5 CD A:GLU192 4.4 29.2 0.5 CG A:HIS188 4.4 30.7 1.0 ND1 A:HIS188 4.4 34.0 1.0 CG1 A:VAL216 4.6 22.0 1.0 CG A:GLU192 4.8 34.3 0.5

Nickel binding site 2 out of 3 in the Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni231 b:26.2 occ:0.50 NI A:NI231 0.0 26.2 0.5 O A:HOH365 1.7 32.1 1.0 NI A:NI231 2.0 15.1 0.5 NE2 A:HIS104 2.2 31.1 1.0 O A:HOH405 2.3 47.9 1.0 O A:HOH385 2.3 39.3 1.0 CE1 A:HIS104 2.4 28.4 1.0 O A:HOH384 2.5 30.8 1.0 NE2 A:HIS158 3.0 26.0 1.0 O A:HOH382 3.4 34.7 1.0 CD2 A:HIS104 3.5 30.5 1.0 CD2 A:HIS158 3.6 27.8 1.0 OD2 A:ASP155 3.7 37.8 1.0 ND1 A:HIS104 3.7 27.3 1.0 OE2 A:GLU103 3.9 23.6 1.0 O A:HOH339 4.1 39.6 1.0 CE1 A:HIS158 4.1 28.2 1.0 CG A:HIS104 4.3 22.3 1.0 CG A:ASP155 4.3 31.7 1.0 OG1 A:THR157 4.4 22.7 1.0 O A:ASP100 4.4 30.6 1.0 CB A:ASP155 4.7 20.8 1.0 CG A:HIS158 4.9 24.7 1.0 OD1 A:ASP155 4.9 25.9 1.0 CD A:GLU103 4.9 22.5 1.0

Nickel binding site 3 out of 3 in the Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 at 1.64 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni231 b:15.1 occ:0.50 NI A:NI231 0.0 15.1 0.5 O A:HOH384 1.9 30.8 1.0 O A:HOH382 2.0 34.7 1.0 NI A:NI231 2.0 26.2 0.5 OE2 A:GLU103 2.0 23.6 1.0 NE2 A:HIS158 2.2 26.0 1.0 NE2 A:HIS104 2.4 31.1 1.0 O A:HOH365 2.5 32.1 1.0 CD A:GLU103 3.1 22.5 1.0 CD2 A:HIS158 3.1 27.8 1.0 CE1 A:HIS158 3.1 28.2 1.0 CD2 A:HIS104 3.2 30.5 1.0 O A:HOH385 3.3 39.3 1.0 CE1 A:HIS104 3.4 28.4 1.0 CG A:GLU103 3.5 23.7 1.0 O A:HOH338 3.9 36.2 1.0 O A:ASP100 4.0 30.6 1.0 ND1 A:HIS158 4.2 26.8 1.0 CG A:HIS158 4.2 24.7 1.0 O A:HOH405 4.2 47.9 1.0 OE1 A:GLU103 4.2 22.6 1.0 C A:ASP100 4.4 25.8 1.0 CB A:ASP100 4.4 33.6 1.0 CG A:HIS104 4.4 22.3 1.0 ND1 A:HIS104 4.5 27.3 1.0 CA A:ASP100 4.5 28.2 1.0 O A:HOH381 4.8 30.3 0.5 O A:HOH339 4.9 39.6 1.0 CG A:PRO130 4.9 24.5 1.0 CB A:GLU103 5.0 22.6 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.