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Nickel in PDB 3csx: Structural Characterization of A Protein in the DUF683 Family- Crystal Structure of CCE_0567 From the Cyanobacterium Cyanothece 51142.

Protein crystallography data

The structure of Structural Characterization of A Protein in the DUF683 Family- Crystal Structure of CCE_0567 From the Cyanobacterium Cyanothece 51142., PDB code: 3csx was solved by A.Addlagatta, H.Robinson, G.W.Buchko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.24 / 1.84
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 29.436, 38.381, 62.643, 90.00, 96.70, 90.00
R / Rfree (%) 21.6 / 29.4

Nickel Binding Sites:

The binding sites of Nickel atom in the Structural Characterization of A Protein in the DUF683 Family- Crystal Structure of CCE_0567 From the Cyanobacterium Cyanothece 51142. (pdb code 3csx). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structural Characterization of A Protein in the DUF683 Family- Crystal Structure of CCE_0567 From the Cyanobacterium Cyanothece 51142., PDB code: 3csx:

Nickel binding site 1 out of 1 in 3csx

Go back to Nickel Binding Sites List in 3csx
Nickel binding site 1 out of 1 in the Structural Characterization of A Protein in the DUF683 Family- Crystal Structure of CCE_0567 From the Cyanobacterium Cyanothece 51142.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structural Characterization of A Protein in the DUF683 Family- Crystal Structure of CCE_0567 From the Cyanobacterium Cyanothece 51142. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni78

b:19.6
occ:1.00
O A:HOH109 1.6 14.8 1.0
O A:HOH108 1.6 18.5 1.0
O A:HOH117 2.0 27.7 1.0
NE2 A:HIS36 2.1 18.4 1.0
CE1 A:HIS36 3.1 21.7 1.0
CD2 A:HIS36 3.1 15.8 1.0
O A:HOH118 3.9 41.6 1.0
ND1 A:HIS36 4.2 18.8 1.0
CG A:HIS36 4.2 18.3 1.0
OE1 A:GLU40 4.5 23.4 1.0

Reference:

G.W.Buchko, H.Robinson, A.Addlagatta. Structural Characterization of the Protein CCE_0567 From Cyanothece 51142, A Metalloprotein Associated with Nitrogen Fixation in the DUF683 Family. Biochim.Biophys.Acta V.1794 627 2009.
ISSN: ISSN 0006-3002
PubMed: 19336042
DOI: 10.1016/J.BBAPAP.2009.01.002
Page generated: Fri Sep 25 08:20:34 2020
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