Nickel in PDB 3i2b: The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Enzymatic activity of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
All present enzymatic activity of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase:
4.2.3.12;
Protein crystallography data
The structure of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase, PDB code: 3i2b
was solved by
E.Ugochukwu,
R.Cocking,
E.Pilka,
W.W.Yue,
J.E.Bray,
A.Chaikuad,
T.Krojer,
J.Muniz,
F.Von Delft,
C.Bountra,
C.H.Arrowsmith,
J.Weigelt,
A.Edwards,
U.Oppermann,
Structural Genomics Consortium (Sgc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
42.94 /
2.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
73.290,
118.720,
234.980,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.6 /
24.6
|
Other elements in 3i2b:
The structure of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase also contains other interesting chemical elements:
Nickel Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Nickel atom in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
(pdb code 3i2b). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 12 binding sites of Nickel where determined in the
The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase, PDB code: 3i2b:
Jump to Nickel binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Nickel binding site 1 out
of 12 in 3i2b
Go back to
Nickel Binding Sites List in 3i2b
Nickel binding site 1 out
of 12 in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Mono view
Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ni146
b:33.8
occ:1.00
|
O
|
A:HOH293
|
1.6
|
12.4
|
1.0
|
NE2
|
A:HIS24
|
1.9
|
14.9
|
1.0
|
NE2
|
A:HIS49
|
2.0
|
15.3
|
1.0
|
NE2
|
A:HIS51
|
2.1
|
16.3
|
1.0
|
CE1
|
A:HIS24
|
2.8
|
15.1
|
1.0
|
OE2
|
A:GLU134
|
2.9
|
20.6
|
1.0
|
CE1
|
A:HIS49
|
2.9
|
15.2
|
1.0
|
CD2
|
A:HIS24
|
3.0
|
16.4
|
1.0
|
CD2
|
A:HIS49
|
3.0
|
14.9
|
1.0
|
CD2
|
A:HIS51
|
3.0
|
14.5
|
1.0
|
CE1
|
A:HIS51
|
3.2
|
14.2
|
1.0
|
CD
|
A:GLU134
|
3.9
|
19.7
|
1.0
|
ND1
|
A:HIS24
|
3.9
|
14.2
|
1.0
|
ND1
|
A:HIS49
|
4.0
|
14.5
|
1.0
|
CG
|
A:HIS49
|
4.0
|
14.6
|
1.0
|
CG
|
A:HIS24
|
4.1
|
14.4
|
1.0
|
CG
|
A:HIS51
|
4.2
|
15.8
|
1.0
|
ND1
|
A:HIS51
|
4.3
|
15.0
|
1.0
|
CG
|
A:GLU134
|
4.5
|
17.4
|
1.0
|
SG
|
A:CYS43
|
4.7
|
20.1
|
1.0
|
OH
|
A:TYR53
|
4.8
|
15.0
|
1.0
|
OE1
|
A:GLU134
|
4.9
|
20.7
|
1.0
|
|
Nickel binding site 2 out
of 12 in 3i2b
Go back to
Nickel Binding Sites List in 3i2b
Nickel binding site 2 out
of 12 in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Mono view
Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ni4
b:29.1
occ:1.00
|
O
|
D:HOH154
|
1.6
|
28.6
|
1.0
|
NE2
|
D:HIS24
|
2.0
|
14.7
|
1.0
|
NE2
|
D:HIS49
|
2.1
|
15.1
|
1.0
|
NE2
|
D:HIS51
|
2.1
|
16.9
|
1.0
|
OE2
|
D:GLU134
|
2.7
|
21.6
|
1.0
|
CE1
|
D:HIS24
|
2.9
|
15.0
|
1.0
|
CD2
|
D:HIS51
|
3.0
|
15.0
|
1.0
|
CE1
|
D:HIS49
|
3.0
|
14.8
|
1.0
|
CD2
|
D:HIS49
|
3.1
|
14.4
|
1.0
|
CD2
|
D:HIS24
|
3.1
|
16.5
|
1.0
|
CE1
|
D:HIS51
|
3.2
|
13.5
|
1.0
|
O
|
I:HOH198
|
3.2
|
34.6
|
1.0
|
CD
|
D:GLU134
|
3.6
|
20.0
|
1.0
|
ND1
|
D:HIS24
|
4.0
|
14.2
|
1.0
|
ND1
|
D:HIS49
|
4.1
|
14.2
|
1.0
|
CG
|
D:HIS49
|
4.2
|
14.9
|
1.0
|
CG
|
D:HIS51
|
4.2
|
15.5
|
1.0
|
CG
|
D:HIS24
|
4.2
|
14.7
|
1.0
|
ND1
|
D:HIS51
|
4.2
|
14.8
|
1.0
|
CG
|
D:GLU134
|
4.3
|
17.8
|
1.0
|
OE1
|
D:GLU134
|
4.5
|
21.1
|
1.0
|
SG
|
D:CYS43
|
4.7
|
20.4
|
1.0
|
OH
|
D:TYR53
|
4.8
|
14.3
|
1.0
|
O
|
D:HOH2
|
4.8
|
16.3
|
1.0
|
NE2
|
I:HIS90
|
5.0
|
16.4
|
1.0
|
|
Nickel binding site 3 out
of 12 in 3i2b
Go back to
Nickel Binding Sites List in 3i2b
Nickel binding site 3 out
of 12 in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Mono view
Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 3 of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ni146
b:35.0
occ:1.00
|
O
|
E:HOH152
|
1.9
|
21.0
|
1.0
|
NE2
|
E:HIS24
|
2.0
|
14.4
|
1.0
|
NE2
|
E:HIS49
|
2.0
|
14.6
|
1.0
|
NE2
|
E:HIS51
|
2.2
|
16.9
|
1.0
|
O
|
E:HOH277
|
2.6
|
31.9
|
1.0
|
OE2
|
E:GLU134
|
2.8
|
20.6
|
1.0
|
CE1
|
E:HIS24
|
2.8
|
15.6
|
1.0
|
CE1
|
E:HIS49
|
2.9
|
15.2
|
1.0
|
CD2
|
E:HIS49
|
3.1
|
15.2
|
1.0
|
CD2
|
E:HIS24
|
3.1
|
16.5
|
1.0
|
CD2
|
E:HIS51
|
3.1
|
14.9
|
1.0
|
CE1
|
E:HIS51
|
3.2
|
14.2
|
1.0
|
CD
|
E:GLU134
|
3.7
|
19.9
|
1.0
|
ND1
|
E:HIS24
|
4.0
|
14.3
|
1.0
|
ND1
|
E:HIS49
|
4.1
|
14.3
|
1.0
|
CG
|
E:HIS24
|
4.1
|
14.8
|
1.0
|
CG
|
E:HIS49
|
4.2
|
15.1
|
1.0
|
CG
|
E:HIS51
|
4.3
|
15.4
|
1.0
|
ND1
|
E:HIS51
|
4.3
|
15.1
|
1.0
|
CG
|
E:GLU134
|
4.4
|
17.6
|
1.0
|
OE1
|
E:GLU134
|
4.6
|
20.0
|
1.0
|
OH
|
E:TYR53
|
4.7
|
14.9
|
1.0
|
SG
|
E:CYS43
|
4.7
|
20.0
|
1.0
|
|
Nickel binding site 4 out
of 12 in 3i2b
Go back to
Nickel Binding Sites List in 3i2b
Nickel binding site 4 out
of 12 in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Mono view
Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 4 of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ni2
b:31.3
occ:1.00
|
O
|
B:HOH275
|
1.6
|
30.4
|
1.0
|
NE2
|
B:HIS24
|
2.0
|
13.5
|
1.0
|
NE2
|
B:HIS49
|
2.0
|
14.6
|
1.0
|
NE2
|
B:HIS51
|
2.2
|
16.2
|
1.0
|
OE2
|
B:GLU134
|
2.8
|
20.6
|
1.0
|
CE1
|
B:HIS24
|
2.9
|
14.8
|
1.0
|
CE1
|
B:HIS49
|
2.9
|
15.6
|
1.0
|
CD2
|
B:HIS24
|
3.0
|
16.3
|
1.0
|
CD2
|
B:HIS51
|
3.1
|
14.5
|
1.0
|
CD2
|
B:HIS49
|
3.1
|
15.0
|
1.0
|
CE1
|
B:HIS51
|
3.2
|
14.5
|
1.0
|
CD
|
B:GLU134
|
3.8
|
20.0
|
1.0
|
O
|
B:HOH201
|
3.8
|
30.1
|
1.0
|
ND1
|
B:HIS24
|
4.0
|
14.2
|
1.0
|
ND1
|
B:HIS49
|
4.1
|
14.3
|
1.0
|
CG
|
B:HIS24
|
4.1
|
14.9
|
1.0
|
CG
|
B:HIS49
|
4.2
|
14.9
|
1.0
|
CG
|
B:HIS51
|
4.2
|
15.2
|
1.0
|
ND1
|
B:HIS51
|
4.3
|
15.0
|
1.0
|
CG
|
B:GLU134
|
4.4
|
17.9
|
1.0
|
OE1
|
B:GLU134
|
4.7
|
21.1
|
1.0
|
SG
|
B:CYS43
|
4.7
|
21.2
|
1.0
|
OH
|
B:TYR53
|
4.8
|
15.2
|
1.0
|
|
Nickel binding site 5 out
of 12 in 3i2b
Go back to
Nickel Binding Sites List in 3i2b
Nickel binding site 5 out
of 12 in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Mono view
Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 5 of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ni3
b:29.6
occ:1.00
|
NE2
|
C:HIS49
|
2.0
|
13.6
|
1.0
|
O
|
C:HOH159
|
2.1
|
26.2
|
1.0
|
NE2
|
C:HIS24
|
2.1
|
14.2
|
1.0
|
NE2
|
C:HIS51
|
2.1
|
17.1
|
1.0
|
OE2
|
C:GLU134
|
2.6
|
21.4
|
1.0
|
CE1
|
C:HIS49
|
2.9
|
15.2
|
1.0
|
CE1
|
C:HIS24
|
2.9
|
14.7
|
1.0
|
O
|
C:HOH270
|
3.0
|
31.5
|
1.0
|
CD2
|
C:HIS49
|
3.0
|
14.4
|
1.0
|
CD2
|
C:HIS51
|
3.1
|
14.9
|
1.0
|
CE1
|
C:HIS51
|
3.1
|
13.9
|
1.0
|
CD2
|
C:HIS24
|
3.1
|
16.2
|
1.0
|
CD
|
C:GLU134
|
3.6
|
19.7
|
1.0
|
ND1
|
C:HIS49
|
4.0
|
14.2
|
1.0
|
CG
|
C:HIS49
|
4.1
|
14.9
|
1.0
|
ND1
|
C:HIS24
|
4.1
|
14.3
|
1.0
|
ND1
|
C:HIS51
|
4.2
|
14.6
|
1.0
|
CG
|
C:HIS51
|
4.2
|
15.6
|
1.0
|
CG
|
C:HIS24
|
4.2
|
15.3
|
1.0
|
OE1
|
C:GLU134
|
4.4
|
20.5
|
1.0
|
CG
|
C:GLU134
|
4.4
|
17.1
|
1.0
|
SG
|
C:CYS43
|
4.6
|
20.6
|
1.0
|
OH
|
C:TYR53
|
4.8
|
14.3
|
1.0
|
O
|
C:HOH148
|
4.8
|
13.8
|
1.0
|
|
Nickel binding site 6 out
of 12 in 3i2b
Go back to
Nickel Binding Sites List in 3i2b
Nickel binding site 6 out
of 12 in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Mono view
Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 6 of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ni146
b:41.0
occ:1.00
|
NE2
|
F:HIS49
|
2.0
|
14.9
|
1.0
|
NE2
|
F:HIS24
|
2.0
|
14.3
|
1.0
|
NE2
|
F:HIS51
|
2.2
|
16.5
|
1.0
|
O
|
F:HOH295
|
2.2
|
33.1
|
1.0
|
OE2
|
F:GLU134
|
2.8
|
20.3
|
1.0
|
O
|
F:HOH203
|
2.8
|
29.3
|
1.0
|
CE1
|
F:HIS49
|
2.9
|
14.9
|
1.0
|
CE1
|
F:HIS24
|
2.9
|
15.3
|
1.0
|
CD2
|
F:HIS49
|
3.0
|
15.5
|
1.0
|
CD2
|
F:HIS51
|
3.1
|
15.1
|
1.0
|
CD2
|
F:HIS24
|
3.1
|
16.3
|
1.0
|
CE1
|
F:HIS51
|
3.2
|
14.7
|
1.0
|
CD
|
F:GLU134
|
3.7
|
19.1
|
1.0
|
ND1
|
F:HIS49
|
4.0
|
14.4
|
1.0
|
ND1
|
F:HIS24
|
4.1
|
14.5
|
1.0
|
CG
|
F:HIS49
|
4.1
|
14.9
|
1.0
|
CG
|
F:HIS24
|
4.2
|
15.0
|
1.0
|
ND1
|
F:HIS51
|
4.3
|
14.8
|
1.0
|
CG
|
F:HIS51
|
4.3
|
15.4
|
1.0
|
O
|
F:HOH285
|
4.3
|
26.2
|
1.0
|
CG
|
F:GLU134
|
4.4
|
17.1
|
1.0
|
SG
|
F:CYS43
|
4.5
|
20.9
|
1.0
|
OE1
|
F:GLU134
|
4.5
|
19.7
|
1.0
|
OH
|
F:TYR53
|
4.9
|
14.8
|
1.0
|
|
Nickel binding site 7 out
of 12 in 3i2b
Go back to
Nickel Binding Sites List in 3i2b
Nickel binding site 7 out
of 12 in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Mono view
Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 7 of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ni146
b:35.7
occ:1.00
|
O
|
G:HOH155
|
1.7
|
12.8
|
1.0
|
NE2
|
G:HIS49
|
1.9
|
15.0
|
1.0
|
NE2
|
G:HIS24
|
2.0
|
14.3
|
1.0
|
NE2
|
G:HIS51
|
2.1
|
16.6
|
1.0
|
OE2
|
G:GLU134
|
2.8
|
20.6
|
1.0
|
CE1
|
G:HIS49
|
2.9
|
15.2
|
1.0
|
CE1
|
G:HIS24
|
2.9
|
15.5
|
1.0
|
CD2
|
G:HIS49
|
2.9
|
14.8
|
1.0
|
CD2
|
G:HIS51
|
3.0
|
14.4
|
1.0
|
CD2
|
G:HIS24
|
3.1
|
15.8
|
1.0
|
CE1
|
G:HIS51
|
3.1
|
13.8
|
1.0
|
CD
|
G:GLU134
|
3.7
|
19.8
|
1.0
|
ND1
|
G:HIS49
|
4.0
|
14.3
|
1.0
|
O
|
G:HOH205
|
4.0
|
35.5
|
1.0
|
CG
|
G:HIS49
|
4.0
|
14.9
|
1.0
|
ND1
|
G:HIS24
|
4.0
|
15.2
|
1.0
|
CG
|
G:HIS24
|
4.2
|
14.8
|
1.0
|
CG
|
G:HIS51
|
4.2
|
15.6
|
1.0
|
ND1
|
G:HIS51
|
4.2
|
14.8
|
1.0
|
CG
|
G:GLU134
|
4.4
|
17.4
|
1.0
|
SG
|
G:CYS43
|
4.4
|
21.0
|
1.0
|
OE1
|
G:GLU134
|
4.6
|
20.1
|
1.0
|
OH
|
G:TYR53
|
4.8
|
14.3
|
1.0
|
NE2
|
A:HIS90
|
5.0
|
16.1
|
1.0
|
|
Nickel binding site 8 out
of 12 in 3i2b
Go back to
Nickel Binding Sites List in 3i2b
Nickel binding site 8 out
of 12 in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Mono view
Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 8 of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ni146
b:36.9
occ:1.00
|
NE2
|
H:HIS24
|
2.0
|
14.0
|
1.0
|
NE2
|
H:HIS49
|
2.1
|
14.5
|
1.0
|
NE2
|
H:HIS51
|
2.1
|
16.8
|
1.0
|
O
|
H:HOH152
|
2.2
|
22.4
|
1.0
|
OE2
|
H:GLU134
|
2.7
|
20.2
|
1.0
|
O
|
E:HOH196
|
2.8
|
13.7
|
1.0
|
CE1
|
H:HIS24
|
2.9
|
15.9
|
1.0
|
CE1
|
H:HIS49
|
3.0
|
15.1
|
1.0
|
CD2
|
H:HIS51
|
3.1
|
14.9
|
1.0
|
CD2
|
H:HIS49
|
3.1
|
15.5
|
1.0
|
CD2
|
H:HIS24
|
3.2
|
16.4
|
1.0
|
CE1
|
H:HIS51
|
3.2
|
14.1
|
1.0
|
CD
|
H:GLU134
|
3.7
|
19.3
|
1.0
|
ND1
|
H:HIS24
|
4.1
|
14.3
|
1.0
|
ND1
|
H:HIS49
|
4.1
|
14.3
|
1.0
|
CG
|
H:HIS49
|
4.2
|
15.2
|
1.0
|
CG
|
H:HIS51
|
4.2
|
15.4
|
1.0
|
CG
|
H:HIS24
|
4.2
|
14.7
|
1.0
|
ND1
|
H:HIS51
|
4.2
|
14.7
|
1.0
|
CG
|
H:GLU134
|
4.3
|
17.5
|
1.0
|
SG
|
H:CYS43
|
4.5
|
20.4
|
1.0
|
OE1
|
H:GLU134
|
4.5
|
19.6
|
1.0
|
OH
|
H:TYR53
|
4.8
|
15.0
|
1.0
|
O
|
H:HOH218
|
5.0
|
16.9
|
1.0
|
|
Nickel binding site 9 out
of 12 in 3i2b
Go back to
Nickel Binding Sites List in 3i2b
Nickel binding site 9 out
of 12 in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Mono view
Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 9 of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ni146
b:31.4
occ:1.00
|
O
|
I:HOH152
|
2.0
|
26.7
|
1.0
|
NE2
|
I:HIS49
|
2.0
|
14.7
|
1.0
|
NE2
|
I:HIS24
|
2.1
|
13.8
|
1.0
|
NE2
|
I:HIS51
|
2.2
|
16.7
|
1.0
|
O
|
I:HOH273
|
2.6
|
22.7
|
1.0
|
OE2
|
I:GLU134
|
2.6
|
20.4
|
1.0
|
CE1
|
I:HIS24
|
2.9
|
15.2
|
1.0
|
CE1
|
I:HIS49
|
2.9
|
15.2
|
1.0
|
CD2
|
I:HIS49
|
3.0
|
15.2
|
1.0
|
CD2
|
I:HIS24
|
3.2
|
16.1
|
1.0
|
CD2
|
I:HIS51
|
3.2
|
14.1
|
1.0
|
CE1
|
I:HIS51
|
3.2
|
14.2
|
1.0
|
CD
|
I:GLU134
|
3.7
|
19.4
|
1.0
|
ND1
|
I:HIS49
|
4.0
|
14.0
|
1.0
|
ND1
|
I:HIS24
|
4.1
|
14.4
|
1.0
|
CG
|
I:HIS49
|
4.1
|
15.1
|
1.0
|
CG
|
I:HIS24
|
4.2
|
14.9
|
1.0
|
ND1
|
I:HIS51
|
4.3
|
15.1
|
1.0
|
CG
|
I:HIS51
|
4.3
|
15.5
|
1.0
|
CG
|
I:GLU134
|
4.5
|
17.4
|
1.0
|
SG
|
I:CYS43
|
4.5
|
19.4
|
1.0
|
OE1
|
I:GLU134
|
4.6
|
20.0
|
1.0
|
OH
|
I:TYR53
|
4.9
|
14.4
|
1.0
|
NE2
|
D:HIS90
|
5.0
|
16.3
|
1.0
|
|
Nickel binding site 10 out
of 12 in 3i2b
Go back to
Nickel Binding Sites List in 3i2b
Nickel binding site 10 out
of 12 in the The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
Mono view
Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 10 of The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ni146
b:29.2
occ:1.00
|
O
|
J:HOH157
|
2.0
|
38.0
|
1.0
|
NE2
|
J:HIS24
|
2.0
|
13.3
|
1.0
|
NE2
|
J:HIS49
|
2.0
|
14.6
|
1.0
|
NE2
|
J:HIS51
|
2.2
|
16.7
|
1.0
|
OE2
|
J:GLU134
|
2.8
|
20.5
|
1.0
|
CE1
|
J:HIS24
|
2.8
|
15.5
|
1.0
|
CE1
|
J:HIS49
|
3.0
|
15.2
|
1.0
|
O
|
J:HOH272
|
3.0
|
25.1
|
1.0
|
CD2
|
J:HIS49
|
3.1
|
15.1
|
1.0
|
CD2
|
J:HIS51
|
3.1
|
14.2
|
1.0
|
CD2
|
J:HIS24
|
3.1
|
16.0
|
1.0
|
CE1
|
J:HIS51
|
3.2
|
13.8
|
1.0
|
CD
|
J:GLU134
|
3.7
|
19.7
|
1.0
|
ND1
|
J:HIS24
|
4.0
|
14.8
|
1.0
|
ND1
|
J:HIS49
|
4.1
|
14.4
|
1.0
|
CG
|
J:HIS49
|
4.2
|
14.8
|
1.0
|
CG
|
J:HIS24
|
4.2
|
14.4
|
1.0
|
CG
|
J:HIS51
|
4.2
|
15.6
|
1.0
|
ND1
|
J:HIS51
|
4.3
|
14.7
|
1.0
|
CG
|
J:GLU134
|
4.4
|
17.4
|
1.0
|
SG
|
J:CYS43
|
4.6
|
20.7
|
1.0
|
OE1
|
J:GLU134
|
4.6
|
20.9
|
1.0
|
O
|
J:HOH156
|
4.8
|
27.3
|
1.0
|
OH
|
J:TYR53
|
4.8
|
14.5
|
1.0
|
O
|
J:HOH1
|
4.9
|
13.9
|
1.0
|
|
Reference:
E.Ugochukwu,
R.Cocking,
E.Pilka,
W.W.Yue,
J.E.Bray,
A.Chaikuad,
T.Krojer,
J.Muniz,
U.Oppermann.
The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase To Be Published.
Page generated: Wed Oct 9 17:22:58 2024
|