Nickel in PDB 3iht: Crystal Structure of S-Adenosyl-L-Methionine Methyl Transferase (YP_165822.1) From Silicibacter Pomeroyi Dss-3 at 1.80 A Resolution

The structure of Crystal Structure of S-Adenosyl-L-Methionine Methyl Transferase (YP_165822.1) From Silicibacter Pomeroyi Dss-3 at 1.80 A Resolution, PDB code: 3iht was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.93 / 1.80
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	97.568, 97.568, 85.813, 90.00, 90.00, 120.00
R / Rfree (%)	17.3 / 19.4

The binding sites of Nickel atom in the Crystal Structure of S-Adenosyl-L-Methionine Methyl Transferase (YP_165822.1) From Silicibacter Pomeroyi Dss-3 at 1.80 A Resolution (pdb code 3iht). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of S-Adenosyl-L-Methionine Methyl Transferase (YP_165822.1) From Silicibacter Pomeroyi Dss-3 at 1.80 A Resolution, PDB code: 3iht:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of S-Adenosyl-L-Methionine Methyl Transferase (YP_165822.1) From Silicibacter Pomeroyi Dss-3 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of S-Adenosyl-L-Methionine Methyl Transferase (YP_165822.1) From Silicibacter Pomeroyi Dss-3 at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni174 b:25.1 occ:0.80 OE2 A:GLU151 1.9 29.5 1.0 O A:HOH342 2.5 39.8 1.0 CD A:GLU151 2.8 31.0 1.0 OE1 A:GLU151 3.1 31.1 1.0 NI A:NI175 3.3 41.0 0.5 CG A:GLU151 4.2 24.6 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of S-Adenosyl-L-Methionine Methyl Transferase (YP_165822.1) From Silicibacter Pomeroyi Dss-3 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of S-Adenosyl-L-Methionine Methyl Transferase (YP_165822.1) From Silicibacter Pomeroyi Dss-3 at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni175 b:41.0 occ:0.50 O A:HOH342 2.3 39.8 1.0 NI A:NI174 3.3 25.1 0.8 OE2 A:GLU151 3.8 29.5 1.0 O A:HOH294 4.1 54.5 1.0 OE1 A:GLU151 4.1 31.1 1.0 CD A:GLU151 4.1 31.0 1.0 O A:PHE150 4.8 19.2 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.