Atomistry » Nickel » PDB 2w94-2zpl » 3ii3
Atomistry »
  Nickel »
    PDB 2w94-2zpl »
      3ii3 »

Nickel in PDB 3ii3: Structure of ORF157 From Acidianus Filamentous Virus 1

Protein crystallography data

The structure of Structure of ORF157 From Acidianus Filamentous Virus 1, PDB code: 3ii3 was solved by A.Goulet, P.Redder, M.Pina, D.Prangishvili, H.Van Tilbeurgh, C.Cambillau, V.Campanacci, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.70
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.445, 65.445, 85.604, 90.00, 90.00, 120.00
R / Rfree (%) 27 / 28.1

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of ORF157 From Acidianus Filamentous Virus 1 (pdb code 3ii3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Structure of ORF157 From Acidianus Filamentous Virus 1, PDB code: 3ii3:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3ii3

Go back to Nickel Binding Sites List in 3ii3
Nickel binding site 1 out of 2 in the Structure of ORF157 From Acidianus Filamentous Virus 1


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of ORF157 From Acidianus Filamentous Virus 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni158

b:59.4
occ:0.30
OE1 A:GLU144 2.6 25.6 1.0
OE2 A:GLU144 2.9 27.7 1.0
CD A:GLU144 3.1 27.5 1.0
CD A:LYS147 3.4 33.7 1.0
CE A:LYS147 3.9 32.8 1.0
NZ A:LYS147 4.5 32.8 1.0
CG A:GLU144 4.7 28.3 1.0
CG A:LYS147 4.8 34.0 1.0

Nickel binding site 2 out of 2 in 3ii3

Go back to Nickel Binding Sites List in 3ii3
Nickel binding site 2 out of 2 in the Structure of ORF157 From Acidianus Filamentous Virus 1


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Structure of ORF157 From Acidianus Filamentous Virus 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni159

b:59.4
occ:0.30
NE2 A:HIS77 2.2 28.9 1.0
OD1 A:ASP79 2.2 39.0 1.0
CG A:ASP79 2.8 35.5 1.0
CE1 A:HIS77 3.0 30.1 1.0
OD2 A:ASP79 3.0 38.5 1.0
CD2 A:HIS77 3.4 31.1 1.0
CB A:ASP79 4.0 32.8 1.0
ND1 A:HIS77 4.2 29.3 1.0
CG A:HIS77 4.4 29.2 1.0
CA A:ASP79 4.6 32.2 1.0

Reference:

A.Goulet, M.Pina, P.Redder, D.Prangishvili, L.Vera, J.Lichiere, N.Leulliot, H.Van Tilbeurgh, M.Ortiz-Lombardia, V.Campanacci, C.Cambillau. ORF157 From the Archaeal Virus Acidianus Filamentous Virus 1 Defines A New Class of Nuclease J.Virol. V. 84 5025 2010.
ISSN: ISSN 0022-538X
PubMed: 20200253
DOI: 10.1128/JVI.01664-09
Page generated: Fri Sep 25 08:25:08 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy