Atomistry » Nickel » PDB 2w94-2zpl » 3k9u
Atomistry »
  Nickel »
    PDB 2w94-2zpl »
      3k9u »

Nickel in PDB 3k9u: Crystal Structure of Paia Acetyltransferase (TA0374) From Thermoplasma Acidophilum

Protein crystallography data

The structure of Crystal Structure of Paia Acetyltransferase (TA0374) From Thermoplasma Acidophilum, PDB code: 3k9u was solved by E.V.Filippova, G.Minasov, L.Shuvalova, O.Kiryukhina, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.98 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.280, 70.577, 87.671, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 24.7

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Paia Acetyltransferase (TA0374) From Thermoplasma Acidophilum (pdb code 3k9u). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Paia Acetyltransferase (TA0374) From Thermoplasma Acidophilum, PDB code: 3k9u:

Nickel binding site 1 out of 1 in 3k9u

Go back to Nickel Binding Sites List in 3k9u
Nickel binding site 1 out of 1 in the Crystal Structure of Paia Acetyltransferase (TA0374) From Thermoplasma Acidophilum


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Paia Acetyltransferase (TA0374) From Thermoplasma Acidophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni161

b:21.2
occ:1.00
O8A B:ACO162 2.0 25.0 1.0
O8A A:ACO164 2.0 21.9 1.0
NE2 A:HIS100 2.1 15.7 1.0
NE2 B:HIS100 2.1 9.4 1.0
CD2 B:HIS100 3.0 8.8 1.0
CD2 A:HIS100 3.0 14.5 1.0
P3B A:ACO164 3.0 23.0 1.0
O7A A:ACO164 3.1 20.1 1.0
P3B B:ACO162 3.1 22.6 1.0
CE1 A:HIS100 3.1 18.6 1.0
CE1 B:HIS100 3.1 13.6 1.0
O7A B:ACO162 3.2 20.7 1.0
O B:HOH171 4.0 25.1 1.0
O3B B:ACO162 4.1 24.9 1.0
O9A A:ACO164 4.1 24.3 1.0
O3B A:ACO164 4.2 24.0 1.0
C3B A:ACO164 4.2 23.6 1.0
CG A:HIS100 4.2 17.6 1.0
CG B:HIS100 4.2 15.1 1.0
ND1 A:HIS100 4.2 15.7 1.0
C3B B:ACO162 4.2 23.4 1.0
ND1 B:HIS100 4.2 14.6 1.0
O9A B:ACO162 4.2 27.0 1.0
C2B A:ACO164 4.5 20.9 1.0
C2B B:ACO162 4.7 24.2 1.0
O A:HOH182 4.8 33.8 1.0
O A:HOH183 4.9 34.8 1.0
N3A A:ACO164 4.9 24.3 1.0

Reference:

E.V.Filippova, L.Shuvalova, G.Minasov, O.Kiryukhina, Y.Zhang, S.Clancy, I.Radhakrishnan, A.Joachimiak, W.F.Anderson. Crystal Structure of the Novel Paia N-Acetyltransferase From Thermoplasma Acidophilum Involved in the Negative Control of Sporulation and Degradative Enzyme Production. Proteins V. 79 2566 2011.
ISSN: ISSN 0887-3585
PubMed: 21633970
DOI: 10.1002/PROT.23062
Page generated: Fri Sep 25 08:25:58 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy